Pairwise Alignments

Query, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., methyltransferase/FAD-dependent oxidoreductase from Pseudomonas putida KT2440

 Score =  410 bits (1053), Expect = e-118
 Identities = 250/671 (37%), Positives = 367/671 (54%), Gaps = 30/671 (4%)

Query: 7   ISHAQLGWNDAGTPVSDQFDDVYFSNVNGLAETRYVFLEQNHLPQRWHN-DDQRRFVIAE 65
           + HAQ+ W+D G P S  +DDVYF+   G+ ET++VFL Q  L +R+ N       VI E
Sbjct: 5   LQHAQIDWDDQGRPHSRHYDDVYFAVNEGIEETKHVFLGQTRLAERFANLAPHACTVIGE 64

Query: 66  TGFGTGLNFLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKSDLIQAHQAWPELAQFA 125
           TGFGTG+NF   WQ F   + A+ DA+L   HF+S EKYPL  +D+ +A + WPELA + 
Sbjct: 65  TGFGTGMNFFCAWQLFD--QHAHSDARL---HFVSVEKYPLDHADMARAVRLWPELAAYT 119

Query: 126 QKLHKHYPLAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGLVDAWFLDGFAPSK 185
           + L + Y    P  Q+     G VTL L  GD+ + LP++  Q    +D WFLDGFAP+K
Sbjct: 120 EPLLEQYVAVHPGFQQFTFTGGRVTLTLLIGDVLEQLPQLDAQ----IDVWFLDGFAPAK 175

Query: 186 NPEMWNQNLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKGFGTKREMIAGSL 245
           NP+MW   LFA +A+L+  G    TFT+ G+VRR L++AGFAMKKV G G K E+++G+ 
Sbjct: 176 NPDMWTPELFAQLARLSHPGTVLGTFTTTGWVRRSLVEAGFAMKKVPGIGKKWEVMSGAY 235

Query: 246 SEKVPYTNIAPEFRFEATHGLQEVAIIGGGIASATLATTLARRGVAVTLYCADEKPAQGA 305
              +P        R   T G +E  +IG G+A ++ A +LARRG  VT+    E PAQ A
Sbjct: 236 VGPLPGPCAPWYARPAVTQGPREALVIGAGLAGSSSAASLARRGWQVTVLERHEAPAQEA 295

Query: 306 SGNRQGAVYPLLSGDHNAVSRVFAPAFLFARQWIEQAAEQINFDHDWCGVTQLMWDEKAT 365
           SGN QG +Y  LS    A+S++    F + R+ +++   Q   D D CGV QL +D K  
Sbjct: 296 SGNPQGVLYLKLSAHGTALSQMILSGFGYTRRQLQRL--QRGRDWDACGVLQLAFDSKEA 353

Query: 366 DKLKSMLEGNFPTQLVHGLSAEQTNQQVGVPVDKASVHYPLGGWLSPAELTQGLIHLLEQ 425
           ++ +  L   F   L+H L+  +     GV +    + YP GGW+ P  L Q     L+ 
Sbjct: 354 ER-QGKLAAAFDPGLLHCLARAEAEAIAGVALPGGGLFYPEGGWVHPPALCQ---QQLQH 409

Query: 426 QGKLTAHYQTPIDALTWQPETQLWQLRSGDTLMSHQCVVIASG-HQFDSLSQTAELPLGK 484
            G    H  T  + L  +   + WQ  +GD L++   VV+ +G          A+LPL +
Sbjct: 410 PG---IHLVTHQEVLELRKVDEQWQAWAGDQLLARAPVVVLAGAADVLRFEPCAQLPLKR 466

Query: 485 VKGQVSHIPTTETLSKINSVLCYDGYMTPVSQQNGYHCIGASYDRQHLDATFDPQAQHEN 544
           ++GQ++ +P T +   + +V+C +GY+ P   + G H +GAS+D  H +      A+H+ 
Sbjct: 467 IRGQITRLPATVSSQALRTVVCAEGYVAP--PREGEHTLGASFD-FHSEDLAPTVAEHQG 523

Query: 545 AQKLIH----CLPEQTWPLEVDVSGNQSRQGVRCVSRDHLPFVGNVGEFSKITEQYRDLA 600
              L+      L ++    E+D    Q R   RC S D+LP VG + +     E Y  L 
Sbjct: 524 NLALLDEISVDLAQRLAVAELDPEQLQGRAAFRCTSPDYLPIVGPIADAQAFAEAYAVLG 583

Query: 601 QQHQAEPIALYP---QLYALVGLGSRGLSSAPLMAELLASQMCGDPMPLGVDLLEQLHPS 657
           +  +  P    P    LY   G GSRGL +APL  EL+A+ +CG+P+PL   + +  HP+
Sbjct: 584 RDARQVPDVPCPWLGGLYVNSGHGSRGLITAPLSGELVAAWVCGEPLPLPRAVAQACHPN 643

Query: 658 RMWVRKLRKGK 668
           R  +R+L +GK
Sbjct: 644 RFGLRRLIRGK 654