Pairwise Alignments

Query, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

Subject, 668 a.a., putative peptidase (VIMSS) from Escherichia coli BW25113

 Score =  687 bits (1772), Expect = 0.0
 Identities = 352/666 (52%), Positives = 449/666 (67%), Gaps = 6/666 (0%)

Query: 6   SISHAQLGWNDAGTPVSDQFDDVYFSNVNGLAETRYVFLEQNHLPQRWHNDDQRRFVIAE 65
           SI  A L +N  GTPVS  FDDVYFSN NGL ETRYVFL  N L  R+       FV+AE
Sbjct: 5   SIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNQLEVRFPEHPHPLFVVAE 64

Query: 66  TGFGTGLNFLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKSDLIQAHQAWPELAQFA 125
           +GFGTGLNFL +WQAF  FREA+P A+L+ LHFISFEK+PL+++DL  AHQ WPELA +A
Sbjct: 65  SGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWA 124

Query: 126 QKLHKHYPLAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGLVDAWFLDGFAPSK 185
           ++L   +P+ +P C R++L++G VTLDLWFGDI +   ++       VDAWFLDGFAP+K
Sbjct: 125 EQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK 184

Query: 186 NPEMWNQNLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKGFGTKREMIAGSL 245
           NP+MW QNLF  MA+LA+ G T ATFTSAGFVRRGL DAGF M+K KGFG KREM+ G +
Sbjct: 185 NPDMWTQNLFNAMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRKGFGRKREMLCGVM 244

Query: 246 SEKVPYTNIAPEFRFEATHGLQEVAIIGGGIASATLATTLARRGVAVTLYCADEKPAQGA 305
            + +P    AP F        +E AIIGGGIASA L+  L RRG  VTLYCADE PA GA
Sbjct: 245 EQTLPLPCSAPWFN-RTGSSKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGA 303

Query: 306 SGNRQGAVYPLLSGDHNAVSRVFAPAFLFARQWIEQAAEQINFDHDWCGVTQLMWDEKAT 365
           SGNRQGA+YPLLS    A++R F+ AF FAR++ +Q    + FDHDWCGVTQL WDEK+ 
Sbjct: 304 SGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQL--PVKFDHDWCGVTQLGWDEKSQ 361

Query: 366 DKLKSMLEGNFPTQLVHGLSAEQTNQQVGVPVDKASVHYPLGGWLSPAELTQGLIHLLEQ 425
            K+  ML  + P +L   + A    Q  GV  + + + YP GGWL PAELT+ ++ L +Q
Sbjct: 362 HKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQ 421

Query: 426 QGKLTAHYQTPIDALTWQPETQLWQLRSGDTLMSHQCVVIASGHQFDSLSQTAELPLGKV 485
           QG L  +YQ  +  L+ + +  L    +GD   +H  VV+A+GHQ    SQT+ LP+  V
Sbjct: 422 QG-LQIYYQYQLQNLSRKDDCWLLNF-AGDQQATHSVVVLANGHQISRFSQTSTLPVYSV 479

Query: 486 KGQVSHIPTTETLSKINSVLCYDGYMTPVSQQNGYHCIGASYDRQHLDATFDPQAQHENA 545
            GQVSHIPTT  L+++  VLCYDGY+TP +  N +HCIGASY R   D  +    Q +N 
Sbjct: 480 AGQVSHIPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYHRGSEDTAYSEDDQQQNR 539

Query: 546 QKLIHCLPEQTWPLEVDVSGNQSRQGVRCVSRDHLPFVGNVGEFSKITEQYRDLAQQ-HQ 604
           Q+LI C P+  W  EVDVS  ++R GVRC +RDHLP VGNV ++     +Y  LA+Q  +
Sbjct: 540 QRLIDCFPQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDE 599

Query: 605 AEPIALYPQLYALVGLGSRGLSSAPLMAELLASQMCGDPMPLGVDLLEQLHPSRMWVRKL 664
           A    ++  L+    LGSRGL SAPL AE+LA+QM  +P+P+    L  L+P+R+WVRKL
Sbjct: 600 AVSAPVFDDLFMFAALGSRGLCSAPLCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKL 659

Query: 665 RKGKAL 670
            KGKA+
Sbjct: 660 LKGKAV 665