Pairwise Alignments
Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056
Subject, 976 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056
Score = 70.1 bits (170), Expect = 8e-16
Identities = 73/285 (25%), Positives = 134/285 (47%), Gaps = 30/285 (10%)
Query: 184 SKWALATNVGVYLSDEQGFAHVKNSGKHFIQ---KLYFSHKRRELLVGSKRGALVIDIEN 240
S W + TN G+ + F ++ NS K + + R ++VG+ RG +I+
Sbjct: 307 SVW-VGTNAGIMRLRDAPFINI-NSDKGLVGDYVRTLLPLDDRRVMVGTSRGLSIIEEGL 364
Query: 241 KRPPL-DRIGSS-HVLSIAETEKE---YWIGT-EDGLFVYSFITGKIVQ-LESNNQDGYA 293
L ++G+ +LS+A+ +++ W+GT + GL ++ G++ L+ NN
Sbjct: 365 AHSALMPQVGARPSILSLAKADQQGEKVWVGTVQKGLLLWQ--NGQLRPVLDENN----G 418
Query: 294 LLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAAL-- 351
L ++ A+V D Q +WIGT GI + G T + D S P I AL
Sbjct: 419 LPSSEVRAIVTDPQDNLWIGTSNGIVKRTPQGVLTT------YNKDNSPLPDDYIMALAV 472
Query: 352 NSDGDYLAITAQGLYNFNFSDELRKHLIYPGK----VNDFVIAQEHLWIATEKGLVRYNL 407
+S+G +A G+ F+ ++R + + V F + +++W+AT++G+VRY L
Sbjct: 473 DSEGKLWVGSAVGVAYFDAQGKIRPVDLTKQEQAQYVFGFYMESDYVWMATDRGIVRYRL 532
Query: 408 SRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSE 452
S S+ L + DS+G++W +S+ +W + +
Sbjct: 533 SDASVSLVGRAAGLPIDKFFQMLRDSEGHVWLSSNRGVWKLNYDQ 577
Score = 69.7 bits (169), Expect = 1e-15
Identities = 135/677 (19%), Positives = 265/677 (39%), Gaps = 85/677 (12%)
Query: 136 NGMIWMVDGENFYSYEIRSGRVESLSLHELYQLNSASKVVINDAQFLVSKWALATNVGVY 195
+G+I+ + Y + L + ++N S I+ Q LV +AT+ GV+
Sbjct: 184 HGVIFAATDKGLYRFNDWQASAMELPIGRYERINYIS---ISLNQELV----VATDQGVW 236
Query: 196 LSDEQGFAHVKNSGKHFIQKLYFSHKRRELLVGS-KRGALVIDIENKR----PPLDRIGS 250
++ E+GF + + + L + +G+ RG + ++N++ P +
Sbjct: 237 INTEEGFQSLFVPLEKEVVTLAEQDRAGNWWIGTVNRG--IARLKNQQLQFLEPSRGLPY 294
Query: 251 SHVLS-IAETEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGG 309
S VLS + E W+GT G+ + + S+ L+G + ++
Sbjct: 295 SRVLSWYQDIEGSVWVGTNAGIM--RLRDAPFININSDK----GLVGDYVRTLLPLDDRR 348
Query: 310 MWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGD--YLAITAQGLYN 367
+ +GT +G+ S+ + + + G++ I +A + G+ ++ +GL
Sbjct: 349 VMVGTSRGL---SIIEEGLAH--SALMPQVGARPSILSLAKADQQGEKVWVGTVQKGLLL 403
Query: 368 FNFSDELRKHL-----IYPGKVNDFVI-AQEHLWIATEKGLVRYNLSR--RSIDTPNLPL 419
+ + +LR L + +V V Q++LWI T G+V+ + + N PL
Sbjct: 404 WQ-NGQLRPVLDENNGLPSSEVRAIVTDPQDNLWIGTSNGIVKRTPQGVLTTYNKDNSPL 462
Query: 420 PLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNY-----RDYGSEWMVKAFSPSRITL 474
P I L++DS+G LW S + + K + ++++ + S
Sbjct: 463 P--DDYIMALAVDSEGKLWVGSAVGVAYFDAQGKIRPVDLTKQEQAQYVFGFYMESDYVW 520
Query: 475 LAAVKDGIVIGTEHGAYSLLEKQIRFDFSSHRYGEILQVAEDSSGHIWLVGSYGVFQWRK 534
+A + + + SL+ + + Q+ DS GH+WL + GV++
Sbjct: 521 MATDRGIVRYRLSDASVSLVGRAAGLPID-----KFFQMLRDSEGHVWLSSNRGVWKLNY 575
Query: 535 DQPEAVTVELIEENIQPLCIAESKQGMWLISTKGISYYRNQELTKHFGAPYGLISNEFLS 594
DQ AV G+S Q +HF G+ +++
Sbjct: 576 DQMLAVA-------------------------DGMS---TQLEFEHFDEGDGMATSQANG 607
Query: 595 ASCAVGEEQDNSSLIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKLLGYRMSE 654
+ N L+ + GV + L L +++ SV+ ++++ +
Sbjct: 608 GTNPASASLPNGELLFATAKGVASIKVQRL--QQLSELRLPVVLESVSFDSEIINPDQ-Q 664
Query: 655 PLKIAYGDSISFQFGALPSSRSQSLEYKLNDE---QQWQ-RFDWALLNFDQLLPGKYRLK 710
+ A + +SF + L S+ L+Y+ E + W R + L PGKYR
Sbjct: 665 YIAAAGTNRVSFGYVGLGFVMSERLQYRTKLEGFDRDWSYRGHNTQAEYTNLAPGKYRFF 724
Query: 711 VRSANPTQRYRTEALFDFEVLQP-WYMTSIALVGYVLSVLGLLALALWWRTRMILAANRK 769
V + P + +++P W+ +V + L L + WR R++
Sbjct: 725 VSARYPYGEWNDATFSYVFIIEPHWWQRKEVIVMAGMLFLALAVSLVMWRIRILKRRELY 784
Query: 770 LKAQVELKTSQLRHQSK 786
L QV L+T +LR Q++
Sbjct: 785 LVEQVALQTQKLRLQAE 801
Score = 36.6 bits (83), Expect = 1e-05
Identities = 73/349 (20%), Positives = 145/349 (41%), Gaps = 51/349 (14%)
Query: 290 DGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIA 349
D + L +Y +V + G ++ TDKG++ +F + A A+ + PIG+
Sbjct: 167 DRWLLTDASVYRLVKNQHGVIFAATDKGLY-------RFNDWQASAM-----ELPIGRYE 214
Query: 350 ALN-----SDGDYLAITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQE----HLWIAT-E 399
+N + + + T QG++ N ++E + L P + +A++ + WI T
Sbjct: 215 RINYISISLNQELVVATDQGVW-IN-TEEGFQSLFVPLEKEVVTLAEQDRAGNWWIGTVN 272
Query: 400 KGLVRYNLSRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNYRDYG 459
+G+ R + P+ LP + + D +G++W ++ I L + + +
Sbjct: 273 RGIARLKNQQLQFLEPSRGLP--YSRVLSWYQDIEGSVWVGTNAGI--MRLRDAPFININ 328
Query: 460 SEWMVKAFSPSRITLLAAVKD-GIVIGTEHGAYSLLEKQIRFDFSSHRYG---EILQVAE 515
S+ K + L + D +++GT G S++E+ + + G IL +A+
Sbjct: 329 SD---KGLVGDYVRTLLPLDDRRVMVGTSRG-LSIIEEGLAHSALMPQVGARPSILSLAK 384
Query: 516 -DSSGHIWLVGSY--GVFQWRKDQPEAVTVELIEENIQP-----LCIAESKQGMWLISTK 567
D G VG+ G+ W+ Q V L E N P + + + +W+ ++
Sbjct: 385 ADQQGEKVWVGTVQKGLLLWQNGQLRPV---LDENNGLPSSEVRAIVTDPQDNLWIGTSN 441
Query: 568 GISYYRNQELTKHFGAPYGLISNEFLSASCAVGEEQDNSSLIIGSQFGV 616
GI Q + + + ++++ A E L +GS GV
Sbjct: 442 GIVKRTPQGVLTTYNKDNSPLPDDYIMALAVDSE----GKLWVGSAVGV 486