Pairwise Alignments

Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1400 a.a., Signal transduction histidine kinase from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 94.0 bits (232), Expect = 7e-23
 Identities = 144/603 (23%), Positives = 240/603 (39%), Gaps = 78/603 (12%)

Query: 264 WIGT-EDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIG--TDKGIFY 320
           WIGT   GLF Y   T  +   + N  D Y+L GK +Y M+ D  G +WIG  + +G+  
Sbjct: 293 WIGTLGGGLFAYETKTSTLFHYDDNPSDSYSLNGKSVYTMLEDKNGNLWIGMYSGEGLNK 352

Query: 321 YSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGD-YLAITAQGL-YNFNFSDELRKHL 378
            +   Q F  Y  QA         + K   ++   + ++ +   GL    + SD  R   
Sbjct: 353 INPSSQHFEHYRPQAGDKGSLSGKMVKSILIDHQKNLWIGMFNGGLDLKMDGSDNFRPIP 412

Query: 379 I----YPGKVNDFVI---AQEHLWIATE-KGLVRYNLSRRSI----DTPNLPLPLLQTAI 426
           +      G  N  VI   ++  LWI T+  GL  Y+ S  SI      P+    L +  I
Sbjct: 413 LGGSTEQGSTNVQVIFEDSRHQLWIGTDGSGLYLYSPSLSSIRAYHHDPHDSTSLSKDEI 472

Query: 427 QHLSLDSDGNLW-----GTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDG 481
             ++ D  G LW     G    +    +   +++    +     +F+  R TLL   K+ 
Sbjct: 473 WAIAEDGSGRLWIGMANGGGLNRFDPNTDHFEHFTHIPNNPRTPSFNDIR-TLLVDSKNR 531

Query: 482 IVIGTEHGAYSLLE-KQIRFDFSSH--------RYGEILQVAEDSSGHIWLVGSYGVFQW 532
           + IGT  G  +  + ++  F++  H         +  I  + ED  G IW VG++G    
Sbjct: 532 LWIGTYGGGLNRYDFEKGTFEYYKHDPTNPKSISHDIITSLYEDKRGGIW-VGTFGGGLN 590

Query: 533 RKDQPEAVTVELIEENIQP----LCIAESKQG-MWLISTKGISYY-RNQELTKHFGAPYG 586
           R D          E++  P      + E   G +W+ + KG+S +    +  K++ A  G
Sbjct: 591 RLDPATGNFDHFREKDGLPSDVIKAVLEDNGGQLWISTVKGLSSFDPEMDTFKNYTAEDG 650

Query: 587 LISNEFLSASCAVGEEQDNSSLIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTT- 645
           L SNEF   S     +  +  +  G   G      E++ +   P   +      +N    
Sbjct: 651 LQSNEFNLGSAF---KAIDGKMYFGGTNGFNAFLPEQIGLPQSPQKPILTKLRVLNRLVH 707

Query: 646 ------------KLLGYRMSEPLKIAYGDSISF--QFGALPSSRSQSLEYK---LNDEQQ 688
                       K +GY     L   Y D  SF  +F  +  ++ + + Y       ++ 
Sbjct: 708 PGDTVEQNVLLEKSIGYTDDLTL---YDDHNSFELEFSGMEFNQQEKIGYAYMLAGFDKD 764

Query: 689 WQRFDWA--LLNFDQLLPGKYRLKVRSANPTQ-RYRTEALFDFEVLQPWYMTSIALVGYV 745
           W   D +     +  LLPGKY  KV+S +    +   E      VL PWY ++IA     
Sbjct: 765 WIHTDASRRYAAYSNLLPGKYTFKVKSTSENNLQSSEERTLRISVLPPWYKSTIA----- 819

Query: 746 LSVLGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKI-------VLSNNHQLRKQ 798
             V G+L L + +  + I+    K+K  +  +  + + Q +I         + +H+LR  
Sbjct: 820 YGVYGILFLLIAYFVKSIIGFRIKMKNDLRFERLEKQKQEEINQLKLRFFTNISHELRTP 879

Query: 799 LQL 801
           L L
Sbjct: 880 LML 882



 Score = 71.2 bits (173), Expect = 5e-16
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 18/159 (11%)

Query: 958  YPLEELVIRSGGVLHVLALKERNVIELAWPLATLPELETIHKPEEGEQAAKVGIDEVEKE 1017
            +PL+ L+ +   +LH      R   + A+ L          KPE     +++ I   + E
Sbjct: 1253 FPLDLLIAKIRNLLHT-----RKKFKEAFRL----------KPEI--MPSEISISPADTE 1295

Query: 1018 WLSKVEKLIELHYSDPNFTTSTAAQALYVSERSLQRRFKAATGKTFKESLNEVRLEKACQ 1077
             L K  K+ E H  +P+F  +   Q + +S   L  + KA T  T  E +  +RL++A Q
Sbjct: 1296 LLEKAIKVAEKHMDNPDFDITMFVQEMGMSRTVLFDKIKATTDHTPNEFIQTLRLKRAAQ 1355

Query: 1078 SLL-SGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQF 1115
             LL S  K++++++  GFN+P YFS+ F+  FG SP Q+
Sbjct: 1356 LLLQSEYKVSEISYMVGFNNPKYFSKCFQKQFGSSPRQY 1394



 Score = 46.6 bits (109), Expect = 1e-08
 Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 50/278 (17%)

Query: 287 NNQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIG 346
           N+Q+G  L    I A++ D  G +W GTD G+  +   G QFT Y  Q  + +     + 
Sbjct: 35  NSQEG--LPQNSILAILQDDMGYLWFGTDDGLAKFD--GYQFTVYKHQFNNPNSLNNNVI 90

Query: 347 KIAALNSDGDYLAITAQGLYNFNFSD-------ELRKH-LIYPGKVNDFVIAQE-HLWIA 397
           +  A + +G Y+ I+ +G    N  D        LR H LI   K    ++ Q+ ++W++
Sbjct: 91  RGLAQDKNG-YIWISTEG-GGINIYDPTTESFCSLRNHALIGSKKTGPLLLDQQGNIWVS 148

Query: 398 T-EKGLVRYNLSRRSIDTPNLPLPLLQTAIQHLSLD----SDGNLWGT---SDYQIWSYS 449
           T   G+ +  +   + D   L   + +  + H + D    +D N+W        QIW  +
Sbjct: 149 TLTDGIYKVTVPHPTEDF-GLDQLVGRLKVTHYTKDNSRLADNNIWQVYEDGSQQIWIGT 207

Query: 450 LSEKNYRDYGSEWMVKAFSP-SRITL------LAAVK----DG---IVIGTEHGAYSLLE 495
                  D+G++ +  A    S+ITL      + +VK    DG   + IGTEH    L E
Sbjct: 208 Y------DHGAQKLDPATGAFSKITLSHRGQEVKSVKCFFEDGNGNMWIGTEHHGVFLKE 261

Query: 496 KQ----IRFDFSSHRYGE-ILQVAEDSSGHIWLVGSYG 528
           +     + F  SS   GE I    +   G+IW +G+ G
Sbjct: 262 RDSNTYVPFKTSSSLMGENITSFLQGQQGNIW-IGTLG 298



 Score = 37.0 bits (84), Expect = 1e-05
 Identities = 64/307 (20%), Positives = 115/307 (37%), Gaps = 38/307 (12%)

Query: 253 VLSIAETEKEY-WIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMW 311
           +L+I + +  Y W GT+DGL  +      + + + NN +  +L    I  +  D  G +W
Sbjct: 45  ILAILQDDMGYLWFGTDDGLAKFDGYQFTVYKHQFNNPN--SLNNNVIRGLAQDKNGYIW 102

Query: 312 IGTD-KGIFYYSLFGQQFTRYPAQALSNDGSKTPI-----GKI-AALNSDGDYLAITAQG 364
           I T+  GI  Y    + F      AL       P+     G I  +  +DG Y       
Sbjct: 103 ISTEGGGINIYDPTTESFCSLRNHALIGSKKTGPLLLDQQGNIWVSTLTDGIYKVTVPHP 162

Query: 365 LYNFNFSDELRKHLIYPGKVNDFVIAQEHLWIATEKG-----LVRYNLSRRSIDTPNLPL 419
             +F     + +  +     ++  +A  ++W   E G     +  Y+   + +D      
Sbjct: 163 TEDFGLDQLVGRLKVTHYTKDNSRLADNNIWQVYEDGSQQIWIGTYDHGAQKLDPATGAF 222

Query: 420 PLLQ--------TAIQHLSLDSDGNLW-GTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPS 470
             +          +++    D +GN+W GT  + ++   L E++   Y       +    
Sbjct: 223 SKITLSHRGQEVKSVKCFFEDGNGNMWIGTEHHGVF---LKERDSNTYVPFKTSSSLMGE 279

Query: 471 RIT-LLAAVKDGIVIGTEHGAYSLLEKQIRF-----DFSSHRYG----EILQVAEDSSGH 520
            IT  L   +  I IGT  G     E +        D  S  Y      +  + ED +G+
Sbjct: 280 NITSFLQGQQGNIWIGTLGGGLFAYETKTSTLFHYDDNPSDSYSLNGKSVYTMLEDKNGN 339

Query: 521 IWLVGSY 527
           +W +G Y
Sbjct: 340 LW-IGMY 345