Pairwise Alignments
Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056
Subject, 1473 a.a., response regulator from Bacteroides stercoris CC31F
Score = 68.2 bits (165), Expect = 5e-15
Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 999 KPEEGEQAAKVGIDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVSERSLQRRFKAA 1058
+P EG++A+ + +++++ KV K IE H + N A + +S ++ K
Sbjct: 1348 QPSEGKEASPA-LSPNDRKFMDKVMKTIEKHLDNGNLMVEDIANEVNMSRSVFFKKLKTL 1406
Query: 1059 TGKTFKESLNEVRLEKACQSLLSGA-KIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIE 1117
TG + E L E+R+++A Q + + +AQ+A+ G ND YFS+ FK +G++P+++ E
Sbjct: 1407 TGLSPVEFLKEIRMKRAAQLIETDEYSMAQIAYMVGLNDSHYFSKCFKQQYGITPTEYKE 1466
Query: 1118 DQE 1120
++
Sbjct: 1467 SRK 1469
Score = 44.3 bits (103), Expect = 7e-08
Identities = 56/273 (20%), Positives = 114/273 (41%), Gaps = 30/273 (10%)
Query: 246 DRIGSSHVLSIAETEKEYWIGTE-DGLFVYSF----ITGKIVQLESNNQDGYALLGKKIY 300
D +G ++ ++ + E WIGT+ +GLF + +T ++ Q ++ + Y+L G +IY
Sbjct: 495 DELGIAYAIT-QDHEGTIWIGTKGNGLFAATPQNKPLTYRLKQYTADTDNIYSLSGNEIY 553
Query: 301 AMVNDFQGGMWIGTDKGIFYYSLFG-----QQFTRYPAQALSNDGSKTPIGKIAALNSDG 355
++ D Q +WI T +G Y G +F Y + + ++ + ++ G
Sbjct: 554 SLYEDKQQRIWIATFEGGVNYLEKGVNEESARFINYRNRLKNYPITQCNRTRFITSDTQG 613
Query: 356 DYLAITAQGLY----NFNFSDELRKHLI--YPGKV---------NDFVIAQEHLWIATEK 400
+ +A GL +F+ +++ H PG N F + +++AT
Sbjct: 614 NIWIGSATGLLMCEGDFSEPEKITFHRYSRIPGNPQSLSNNDVHNIFFTQKGEMYVATFG 673
Query: 401 G----LVRYNLSRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNYR 456
G L+ N + + + L + + D+DGNLW ++ ++ + +
Sbjct: 674 GGLNRLLSLNKEQATFKAYTMKNGLPSDVLLSIEEDADGNLWCATEEELCKFIPDTEKIT 733
Query: 457 DYGSEWMVKAFSPSRITLLAAVKDGIVIGTEHG 489
+Y S + + S L D ++ T G
Sbjct: 734 NYPSRVFPRRINFSEGAALRTHSDYLMFNTVKG 766
Score = 38.5 bits (88), Expect = 4e-06
Identities = 62/281 (22%), Positives = 112/281 (39%), Gaps = 34/281 (12%)
Query: 264 WIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGT-DKGIFYYS 322
W T DGL+ + T K + + D L ++ + D G +W+ + D ++ ++
Sbjct: 52 WFATWDGLYKFDGYTFKNYKAQPG--DSIGLSNNRLDNIKEDKYGYIWVRSYDHQVYRFN 109
Query: 323 LFGQQFTRYPAQA-LSNDGSKTPIGKIAALNSDGDYLAITAQ-GLYNFNFSDELRKHLIY 380
+QF P + LS D G + + + + + IT Q ++ + H I
Sbjct: 110 PRTEQFQAIPYENYLSQDIYVLSCGDVWVVTALNELIRITIQPDTREMKATNFFKSHQIS 169
Query: 381 PG-KVND-FVIAQEHLWIATEKGLVRYNLSRRSIDTPNLPLPLLQTAIQ--HLSLDSDGN 436
++N F Q++ WI TE GL R + + + + Q + +L+++
Sbjct: 170 SSERINSIFQDKQQNQWILTENGLYRLSKDKEEEQLSSYFVSPSAKDKQPFYDALENEHA 229
Query: 437 LWGTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVK-------DGIVIGTEHG 489
++ TS + W Y N + FS T +++K D + IGT
Sbjct: 230 IYFTSK-RGWMYEYHPDNGQ----------FSRQEFTTHSSIKSVRQLKHDKLFIGTASD 278
Query: 490 AY---SLLEKQIRF----DFSSHRYGEILQVAEDSSGHIWL 523
+ L K R SS R +I + DS+G IW+
Sbjct: 279 GFFIHDLKNKSFRHYNTSTCSSLRDNQIKEAYVDSNGEIWI 319
Score = 37.4 bits (85), Expect = 9e-06
Identities = 128/609 (21%), Positives = 221/609 (36%), Gaps = 107/609 (17%)
Query: 264 WIGTE-DGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGT-DKGIFYY 321
W+G+ +GL SF T L + D G I A+ D G +W G DK + Y
Sbjct: 415 WLGSYGNGLEKVSFNTNHFHLLTAAPDDP-EFPGSNIRAIYQDRDGYLWTGNKDKIVRVY 473
Query: 322 SLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGD---YLAITAQGLY-----NFNFSDE 373
+ AQ + + +G A+ D + ++ GL+ N +
Sbjct: 474 DKEQRYIGNLTAQGTISPHATDELGIAYAITQDHEGTIWIGTKGNGLFAATPQNKPLTYR 533
Query: 374 LRKHL-----IYPGKVND----FVIAQEHLWIATEKGLVRY------NLSRRSIDTPNL- 417
L+++ IY N+ + Q+ +WIAT +G V Y S R I+ N
Sbjct: 534 LKQYTADTDNIYSLSGNEIYSLYEDKQQRIWIATFEGGVNYLEKGVNEESARFINYRNRL 593
Query: 418 -PLPLLQ-TAIQHLSLDSDGNLWGTS---------DYQ------IWSYSLSEKNYRDYGS 460
P+ Q + ++ D+ GN+W S D+ YS N + +
Sbjct: 594 KNYPITQCNRTRFITSDTQGNIWIGSATGLLMCEGDFSEPEKITFHRYSRIPGNPQSLSN 653
Query: 461 EWMVKAFSPSRITLLAAVKDGIVIGTEHGAYSLLEKQIRFDFSSHRYG----EILQVAED 516
+ F + + A G + + SL ++Q F + + G +L + ED
Sbjct: 654 NDVHNIFFTQKGEMYVATFGGGL----NRLLSLNKEQATFKAYTMKNGLPSDVLLSIEED 709
Query: 517 SSGHIWLVGSYGVFQWRKDQ------PEAVTVELIEENIQPLCIAESKQGMWLISTKGIS 570
+ G++W + ++ D P V I + + + + + KGI
Sbjct: 710 ADGNLWCATEEELCKFIPDTEKITNYPSRVFPRRINFS-EGAALRTHSDYLMFNTVKGIL 768
Query: 571 YYRNQEL-TKHFGAPYGLISNEFLSASCAVGEEQDNSSLIIGSQFGVVKTNTEELAVSNL 629
Y+ + T + P +I A V E+ G++ T+ ++ + L
Sbjct: 769 YFFPDSIHTSTYTPP--IIFTRLQQAEKTVTPEEG----------GILITHIDDTQLLTL 816
Query: 630 PNIQVTFSQVSVNHTTKLLGYRMSEPLKIAYGDSISFQFGALPSSRSQSLEYKLNDEQQW 689
P+ + FS L + Y D+IS+ + + + E ND
Sbjct: 817 PHDKNGFSI-------------QFAALDMKYPDNISYSY------QLEGFEKNWNDIGNQ 857
Query: 690 QRFDWALLNFDQLLPGKYRLKVRSANPTQRY-RTEALFDFEVLQPWYMTSIALVGYVLSV 748
+ + L G Y LKVRS N + VL ++ T A + YVL +
Sbjct: 858 RT-----ATYTNLPKGHYTLKVRSTNSDGVWVENTRTLHITVLPSFWETPWAYLLYVLFI 912
Query: 749 LGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQL-----HH 803
L L+ + I K+ + E+ +LR + I +H+LR L L H
Sbjct: 913 L-LVIFTAAYILFTIFRLKHKVSVEQEISDIKLRFFTNI----SHELRTPLTLIAGPIEH 967
Query: 804 TILGNVLDN 812
+ LDN
Sbjct: 968 VLQHGKLDN 976
Score = 27.7 bits (60), Expect = 0.007
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 288 NQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDG-SKTPIG 346
++DG A K I ++ D +G MW T G+ Y G F Y AQ + G S +
Sbjct: 31 SKDGLAQ--KTIQGIMQDHKGIMWFATWDGL--YKFDGYTFKNYKAQPGDSIGLSNNRLD 86
Query: 347 KIAALNSDGDYLAITAQGLYNFNFSDELRKHLIYPGKVND--FVIAQEHLWIAT 398
I ++ +Y FN E + + Y ++ +V++ +W+ T
Sbjct: 87 NIKEDKYGYIWVRSYDHQVYRFNPRTEQFQAIPYENYLSQDIYVLSCGDVWVVT 140