Pairwise Alignments

Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1315 a.a., response regulator from Bacteroides stercoris CC31F

 Score = 60.1 bits (144), Expect = 1e-12
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 1015 EKEWLSKVEKLIELHYSDPNFTTSTAAQALYVSERSLQRRFKAATGKTFKESLNEVRLEK 1074
            ++E +  V   I+ +  D + + ST A  + VS+ +L R+FK    KT  E +  +RLE 
Sbjct: 1211 DEELIHTVTDFIQSNIDDESLSPSTIADFVGVSKATLYRKFKEIMDKTPSEFIRSIRLEH 1270

Query: 1075 ACQSL-LSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQF 1115
            A + L  +   ++++ F CGF++ SYF + F   +G SP ++
Sbjct: 1271 AAKLLRTTRLTVSEIMFKCGFSNKSYFYREFFKQYGGSPKEY 1312



 Score = 35.0 bits (79), Expect = 4e-05
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 256 IAETEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTD 315
           + ++E   WIGT DGL  Y+   G+ +     ++     +   I   + + +  +WI TD
Sbjct: 45  LEDSENTMWIGTWDGLNAYN---GREITTFRYSKSDPNSISNNIIRQIIEKENCLWIATD 101

Query: 316 KGIFYYSLFGQQFTRY 331
            GI        Q TRY
Sbjct: 102 NGINRLDKQTYQITRY 117



 Score = 31.2 bits (69), Expect = 6e-04
 Identities = 39/194 (20%), Positives = 81/194 (41%), Gaps = 20/194 (10%)

Query: 161 SLHELYQLNSASKVVINDAQFLVSKWALATNVGVYLSDEQGFAHVKNSGKHF------IQ 214
           +++ ++  N+ S + I  + + + K  ++   G Y    +GF    +S K        + 
Sbjct: 426 AVYNIFFTNNDSLMWIGTSGYGLIKMEISKEQGRYRV--KGFRQYNSSDKSISLSNDVVY 483

Query: 215 KLYFSHKRRELLVGSKRGALV-IDIENKR-PPLDRIGS------SHVLSIAETEKEYWIG 266
            +    + + L  G++ G L  I+++N     L+ I S      S +L + +   + WIG
Sbjct: 484 AIASDPENQALWFGTRGGGLHWINLKNNAIKTLEDIDSRILLTNSDILCLFQDHSDTWIG 543

Query: 267 TEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQ 326
           T  GL   + + G              L  K ++ ++ D +  +WI T++G+   ++   
Sbjct: 544 TSYGL---NKLQGCNNDFTLTKYVDGTLTNKTVHGILKDSKNNIWISTNQGLSCLNITNG 600

Query: 327 QFTRYPA-QALSND 339
           +   Y     L ND
Sbjct: 601 KIDNYTLNDGLQND 614