Pairwise Alignments

Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1373 a.a., Sensor kinase protein RcsC from Alteromonas macleodii MIT1002

 Score = 69.7 bits (169), Expect = 1e-15
 Identities = 137/657 (20%), Positives = 264/657 (40%), Gaps = 110/657 (16%)

Query: 249 GSSHVLSIAETEK-EYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQ 307
           G++ + S+  T   ++++ T++G F++   +G  V L    +DG AL   ++ +M+ D +
Sbjct: 204 GANEIRSLLRTSSSQFYVATQEGPFLFFPSSG--VFLAQTTRDGKAL--GQVNSMIEDHE 259

Query: 308 GGMWIGTDKGIFYYSLFGQQFTRYP------AQALSNDGSKT--------------PIGK 347
           G +W  T  G++ ++  G    +         + +  D +KT              P  K
Sbjct: 260 GCIWFVTTTGLYRHTGEGNYVEKMDFGYDNGLRIIYEDHTKTKWVTSEVHGIFKLSPRRK 319

Query: 348 IAALNSD----------------GDYLAITAQG-LYNFNFSDEL---------RKHLIYP 381
           I  +NSD                GD L  TA   +Y +   +++         ++   Y 
Sbjct: 320 IKQINSDSLVSPSGIELDTFKNSGDVLIATANAEIYTWKVKEQILQKEFDSVFKEESEYS 379

Query: 382 GK---VNDFVIAQEH--LWIATEKGLVRYNLSRRSIDTPNLPLPLLQTAIQHL------S 430
            +       ++  +H  +W+A +  + R N  R++ +   L  P   +  +        +
Sbjct: 380 NRGVIERPIIVPDKHGNIWVAQDNFIARVN--RKNGNVSRLEYPREDSKYRQFREFRASA 437

Query: 431 LDSDGNLW-GTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIVIGTEHG 489
           LD++GN+W GT  + ++ Y++    +    +   +    P    ++   +  + IGT  G
Sbjct: 438 LDNEGNVWIGTYKHGVYIYNVQSGAFEHLSTTDGLA--HPEIHAIVNDSQGNMWIGTGSG 495

Query: 490 A--YSLLEK---QIRF--DFSSHRYGEILQ-VAEDSSGHIWLVGSYGVFQWRKDQPEAVT 541
              +S+ +    QI +  D ++   G I++ + E  +G IW+    G+  ++   PE+ +
Sbjct: 496 VNLWSIQDNTFTQIEYNKDHNAGLLGSIVEDIHETKNGQIWIATQRGLNLYK---PESKS 552

Query: 542 VELIEEN-----IQPLCIAESKQG-MWLISTKGISYYR-NQELTKHFGAPYGLISNEFLS 594
            E   E           IA+  +G +WL + KGI  +    E   ++ +  G +S  F S
Sbjct: 553 FEWFGEQKGLPATLVRAIADGDEGQLWLTTNKGIFLFNPATESAINYTSTAGAVSQNFYS 612

Query: 595 ASCAVGEEQDNSSLIIGSQFGV----VKTNTEELAVSNLPNIQVTFSQV-SVNHTTKLLG 649
            S        N++    SQ G+          EL  S +  +   F+++       K L 
Sbjct: 613 NSLL---RATNNTFFTSSQRGIEYFEYVPGQSELVDSKI--VLTGFNKMGEAVSLDKPLS 667

Query: 650 YRMSEPLKIAYGD---SISFQFGALPSSRSQSLEYKLN--DEQQWQRFDWALLNFDQLLP 704
           Y     + ++Y D   S+ F        +     YKL   DEQ     +   ++F  L  
Sbjct: 668 Y--VTDINLSYEDYFFSLDFALLDFSDPKRSHFSYKLEGYDEQWIDIGNHNNVSFTNLNG 725

Query: 705 GKYRLKVRSANPTQRYRTEAL-FDFEVLQPWYMTSIALVGYVLSVLGLLALALWWRTRMI 763
           G Y L V++  P   + +E +  +  V    + T  A   Y   +LG++ L ++ RT + 
Sbjct: 726 GTYTLLVKAMKPNGEWGSEVMSVNLHVAAAPWKTWWAYSIYFAFLLGIVLLIIYLRTHLQ 785

Query: 764 LAANRK-------LKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILGNVLDNI 813
                K       L+ QV  KT+ L+ Q+  +     Q  +  +L    L N+   I
Sbjct: 786 QTEITKQKRFVQALEQQVSEKTASLKAQANDLKKALEQAEEATKLKSEFLANMSHEI 842



 Score = 34.3 bits (77), Expect = 7e-05
 Identities = 71/305 (23%), Positives = 119/305 (39%), Gaps = 64/305 (20%)

Query: 246 DRIGSSHVLSIAETEKEY-WIGT-EDGLFVYSFITGKIVQL-ESNNQDGYALLGKKIYAM 302
           D   SS + SI +  + + W GT E+G+  Y    G+ V L ES++     L       +
Sbjct: 13  DGFVSSEIYSIIQDRQGFLWFGTAENGVMRYD---GRRVTLFESDSDPSQGLSHNDAGNL 69

Query: 303 VNDFQGGMWIGT-DKGIFYYSLFGQQFTRYPAQALSNDGSKTPI--GKIAALNSDGD--- 356
           + D +G +WIGT   G+  Y     +++RY    L++  +   I   +I +L  D     
Sbjct: 70  MLDAEGNIWIGTWGGGVNKYDPTTGRYSRY----LNDPDNPRSISSNRIQSLFHDKTGQI 125

Query: 357 YLAITAQGLYNFNFSDELRK--------HLIYPGKVNDFVIAQEH-LWIATEKGLVRYNL 407
           +L    QGL  F  + E  +        H +   ++ D +   ++ LW+AT  GL    L
Sbjct: 126 WLGSYDQGLNRFLGNGEFERVQKKSNEDHSLSHNRIWDIMDNNDNSLWVATSFGL--NLL 183

Query: 408 SRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWS-YSLSEKNYRDYGSEWMVKA 466
            +R++            A +H   D D N   T   +I S    S   +     E     
Sbjct: 184 DKRTL------------ATKHFFPDPD-NRTATGANEIRSLLRTSSSQFYVATQEGPFLF 230

Query: 467 FSPSRITLLAAVKDGIVIGTEHGAYSLLEKQIRFDFSSHRYGEILQVAEDSSGHIWLVGS 526
           F  S + L    +DG  +                       G++  + ED  G IW V +
Sbjct: 231 FPSSGVFLAQTTRDGKAL-----------------------GQVNSMIEDHEGCIWFVTT 267

Query: 527 YGVFQ 531
            G+++
Sbjct: 268 TGLYR 272



 Score = 32.3 bits (72), Expect = 3e-04
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 47/156 (30%)

Query: 289 QDGYALLGKKIYAMVNDFQGGMWIGT-DKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGK 347
           +DG+  +  +IY+++ D QG +W GT + G+  Y   G++ T + + +  + G       
Sbjct: 12  EDGF--VSSEIYSIIQDRQGFLWFGTAENGVMRYD--GRRVTLFESDSDPSQGLS----- 62

Query: 348 IAALNSDGDYLAITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQEHLWIATEKGLV-RYN 406
               ++D   L + A+G                            ++WI T  G V +Y+
Sbjct: 63  ----HNDAGNLMLDAEG----------------------------NIWIGTWGGGVNKYD 90

Query: 407 LS----RRSIDTPNLPLPLLQTAIQHLSLDSDGNLW 438
            +     R ++ P+ P  +    IQ L  D  G +W
Sbjct: 91  PTTGRYSRYLNDPDNPRSISSNRIQSLFHDKTGQIW 126