Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., flagellar biosynthesis protein FlhA from Pseudomonas simiae WCS417

 Score =  845 bits (2183), Expect = 0.0
 Identities = 431/685 (62%), Positives = 550/685 (80%), Gaps = 10/685 (1%)

Query: 22  IGAPVMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLDFAAFPTVLLIA 81
           +G P+++L  LAM++LPMP FLLD+FFTFNIALS+VVLLV VY  RPLDFA FPT+LL+A
Sbjct: 22  LGVPLLLLVMLAMMMLPMPPFLLDVFFTFNIALSVVVLLVCVYALRPLDFAVFPTILLVA 81

Query: 82  TLLRLALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVFLILMIINFMVV 141
           TLLRLALNVASTRVV+L+G +G  AAG VI+AFG VVIGGNY VG+VVF ILMIINF+VV
Sbjct: 82  TLLRLALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVV 141

Query: 142 TKGAGRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTKEADFYGSMDGA 201
           TKGAGRISEVSARFTLDA+PGKQMAIDADLNAGLIDQ QA+ RR EV +EA+FYGSMDGA
Sbjct: 142 TKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQNQAKSRRLEVAQEAEFYGSMDGA 201

Query: 202 SKFVKGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDGLVAQIPSLLLS 261
           SKFV+GDAIAG+LILFIN+IGG+++G+ Q+ + F +A ++Y LLTIGDGLVAQ+PSLLLS
Sbjct: 202 SKFVRGDAIAGLLILFINLIGGMAVGIFQHGMTFGDAGKVYALLTIGDGLVAQLPSLLLS 261

Query: 262 IGAAIMVTRQNTDEDMGQQVIFQLFDNPKALTITAGILFVMGIVPGMPHFAFLFLALLAS 321
             AAIMVTR +  EDMG+Q+  Q+F +PKAL + AGI+ +MGIVPGMPH +FL +A +A+
Sbjct: 262 TAAAIMVTRASGSEDMGKQISRQMFASPKALAVAAGIMAIMGIVPGMPHVSFLSMAAMAA 321

Query: 322 GAAYWLHRKQ---KTKAENKNLPAKSDVETPTQ----RELSWDDVQPVDVIGLEVGYRLI 374
           G AY   +KQ   K +A+ +    +  + +P +    +EL WDDV P+D+IGLEVGYRLI
Sbjct: 322 GGAYLFWKKQNAVKVQAQQEIARQQELLPSPARAQETKELGWDDVTPIDMIGLEVGYRLI 381

Query: 375 PLVDKDQGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELTPNSYRITLMGVAVGEAEI 434
           PLVD++QGG+LL R+KGVRKKLSQD GFL+P VHIRDNL+L P++YR+TLMGV + EAEI
Sbjct: 382 PLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEAEI 441

Query: 435 RPDQELAINPGQVYGMIDGERTRDPAFGLDAVWIREDQREHAQALGYTVVDSSTVLATHL 494
            PD+ELAINPGQV+G ++G   +DPAFGLDAVWI   QR  AQ+LGYTVVD+STV+ATHL
Sbjct: 442 YPDRELAINPGQVFGSLNGITAKDPAFGLDAVWIEISQRSQAQSLGYTVVDASTVVATHL 501

Query: 495 SQLLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLGVVVKVLQNLLHEAIPIR 554
           +Q+L  ++ +LIGHEEVQ L+ +L++++PKL E  VP  LSL  ++KVLQ LL E +P+R
Sbjct: 502 NQILYKHSHELIGHEEVQQLMGLLAKASPKLAEELVPGVLSLSQLLKVLQALLAEQVPVR 561

Query: 555 DIRTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVEPELPVITLIPELEQILHQ 614
           DIR+I + ++  A+KSQ+   L AAVR+ L R IVQ I G++ ELPVITL P LEQIL  
Sbjct: 562 DIRSIAEAIANNAAKSQDTAALVAAVRVGLSRAIVQSIVGLDSELPVITLEPRLEQILLN 621

Query: 615 TMQASG-GESAGI--EPGLAERLQMALSHATQEQELKGEPAVLLTSGVLRSTLAKFVKNT 671
           ++Q +G G+  G+  EP +AE+LQ +L  A Q QE++G+P +LL +G +R+ L++F +  
Sbjct: 622 SIQKAGQGQEEGVLLEPSMAEKLQRSLIDAAQRQEMQGQPVILLVAGPVRAMLSRFGRLA 681

Query: 672 IPNLRVLSYQEIPDEKQIRIVQAVG 696
           +PNL VL+YQEIPD KQ+ IV  VG
Sbjct: 682 VPNLHVLAYQEIPDNKQVTIVATVG 706