Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  370 bits (949), Expect = e-106
 Identities = 221/675 (32%), Positives = 389/675 (57%), Gaps = 40/675 (5%)

Query: 27  MVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLDFAAFPTVLLIATLLRL 86
           ++L A+ M++LP+P +++D+  T N+  S+++LL+ +Y   PLD + FP++LLI TL RL
Sbjct: 29  VLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRL 88

Query: 87  ALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVFLILMIINFMVVTKGAG 146
           +L ++++R+VLL  +     AGN+++AFG  V+GGN  VGLVVF I+ I+ F+V+TKG  
Sbjct: 89  SLTISTSRLVLLQHN-----AGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIE 143

Query: 147 RISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTKEADFYGSMDGASKFVK 206
           R++EVSARF+LD +PGKQM+ID DL AG+ID + AR  R  V +E+ F G+MDGA KFVK
Sbjct: 144 RVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVK 203

Query: 207 GDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDGLVAQIPSLLLSIGAAI 266
           GD IAGI+++ +NIIGG+ I ++QYD+   EA+  Y++L+IGDGL  QIPSLL+S+ A I
Sbjct: 204 GDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGI 263

Query: 267 MVTRQNTD--EDMGQQVIFQLFDNPKALTITAGILFVMGIVPGMPHFAFLFLALLASGAA 324
           +VTR   +  +++  ++  Q+   P++L +TA +L ++ ++PG P     F + L +   
Sbjct: 264 IVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPI 323

Query: 325 YWLHRKQKTKAENKNLPAKSDVETPTQRELSWDDVQPVDVIGLEVGYRLIPLVDKDQGGE 384
             + RK       K++ + + VE P +     D + P       +  RL P +      +
Sbjct: 324 ILIRRK-------KSVVSANGVEAPEK-----DSMVPG---ACPLILRLSPTL---HSAD 365

Query: 385 LLERVKGVRKKLSQDFGFLIPPVHI----RDNLELTPNSYRITLMGVAVGEAEIRPDQEL 440
           L+  +  +R  L +D G  +P V+I        +LT   Y+  +  +++      P Q  
Sbjct: 366 LIRDIDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQEPVFSLSI------PAQAD 419

Query: 441 AINPGQVYGMIDGERTRDPAFGLDAVWIREDQREHAQALGYTVVDSSTVLATHLSQLLTN 500
            +  G    ++   +T     G    W+ +D    AQ  G  V   S  ++  L  +L  
Sbjct: 420 YLLIGADASVVGDSQTLPNGMG-QICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLR 478

Query: 501 NAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLGVVVKVLQNLLHEAIPIRDIRTIV 560
           +  + IG +E + L+  + ++  +LV+  +  QL +  + + LQ L+ E + IRD+R I 
Sbjct: 479 HMGEFIGVQETRYLMNAMEKNYSELVKE-LQRQLPINKIAETLQRLVSERVSIRDLRLIF 537

Query: 561 QTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVEPELPVITLIPELEQILHQTMQASG 620
            TL ++A + ++  +LT  VRI+L+R I++ +N     LP++ +   +E ++ ++++ + 
Sbjct: 538 GTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQT- 596

Query: 621 GESAGIEPGLAERLQMALSHATQEQELKGEPAVLLTSGVLRSTLAKFVKNTIPNLRVLSY 680
             + G    L+ R +  +    ++   +     ++TS   R  L K  + T+ ++ +LS+
Sbjct: 597 --AMGTYTALSSRHKTQILQLIEQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSW 654

Query: 681 QEIPDEKQIRIVQAV 695
           QE+ +E  I++V+++
Sbjct: 655 QELGEESLIQVVESI 669