Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 692 a.a., flagellar biosynthesis protein A (NCBI) from Escherichia coli BW25113

 Score =  717 bits (1852), Expect = 0.0
 Identities = 366/676 (54%), Positives = 497/676 (73%), Gaps = 8/676 (1%)

Query: 22  IGAPVMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLDFAAFPTVLLIA 81
           +  P+++L  L+M+VLP+PAF+LDL FTFNIALS++VLLV ++T+R L+FAAFPT+LL  
Sbjct: 22  LAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFT 81

Query: 82  TLLRLALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVFLILMIINFMVV 141
           TLLRLALNVASTR++L+ GH G  AAG V+EAFG+ ++GGN+A+G+VVF+IL+IINFMV+
Sbjct: 82  TLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVI 141

Query: 142 TKGAGRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTKEADFYGSMDGA 201
           TKGAGRI+EV ARF LD +PGKQMAIDADLNAGLI +++A+ RR EVT+EADFYGSMDGA
Sbjct: 142 TKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGA 201

Query: 202 SKFVKGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDGLVAQIPSLLLS 261
           SKFV+GDAIAGILI+ INI+GGL +G++Q+ +    A E YTLLTIGDGLVAQIP+L++S
Sbjct: 202 SKFVRGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVIS 261

Query: 262 IGAAIMVTRQNTDEDMGQQVIFQLFDNPKALTITAGILFVMGIVPGMPHFAFLFLALLAS 321
             A ++VTR +TD+D+G+Q++ QLF NP  + ++A +L ++G+VPGMP+  FL       
Sbjct: 262 TAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLL 321

Query: 322 GAAYWLH-RKQKTKAENKNLPAKSDVETPTQRELSWDDVQPVDVIGLEVGYRLIPLVDKD 380
           G A+W+  R+QK  AE K  P K   E  T  E +W+DVQ  D +G+EVGYRLIP+VD  
Sbjct: 322 GLAWWIRGREQKAPAEPK--PVKM-AENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQ 378

Query: 381 QGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELTPNSYRITLMGVAVGEAEIRPDQEL 440
           Q GELL R++ +RKK +Q+ GFL P VHIRDN++L P  YRI + GV +G  +  P + L
Sbjct: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438

Query: 441 AINPGQVYGMIDGERTRDPAFGLDAVWIREDQREHAQALGYTVVDSSTVLATHLSQLLTN 500
           AINPG   G + GE T DPAFGL+A+WI    +E AQ  GYTVV++STV+ATHL+ L++ 
Sbjct: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498

Query: 501 NAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLGVVVKVLQNLLHEAIPIRDIRTIV 560
           +AA+L G +E Q LL+ +++  PKL E+ VP  ++L  + KVLQNLL E +PIRD+RTI+
Sbjct: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558

Query: 561 QTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVEPELPVITLIPELEQILHQTMQASG 620
           +TL+E+A    +P  LTA VR++L R I Q+    + E+ VI L   LE++L Q +Q  G
Sbjct: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618

Query: 621 GESAGIEPGLAERLQMALSHATQEQELKGEPAVLLTSGVLRSTLAKFVKNTIPNLRVLSY 680
               G+EPGLA+RL      A   QE+ G P VLL +  LR  L++F++ ++P L VLS 
Sbjct: 619 ----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674

Query: 681 QEIPDEKQIRIVQAVG 696
            E+ D + IR+   +G
Sbjct: 675 LELSDNRHIRMTATIG 690