Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., type III secretion system export apparatus subunit SctV from Dickeya dianthicola ME23

 Score =  361 bits (926), Expect = e-104
 Identities = 238/702 (33%), Positives = 389/702 (55%), Gaps = 53/702 (7%)

Query: 13  SIPQRSMPAIGAPVMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLDFA 72
           S  QRS   +GA V+V+A + M+++P+P  L+D+   FNI +S +++++ +Y  +PL F+
Sbjct: 14  SAMQRS-EVVGA-VIVMAIVFMMIIPLPTGLIDVLIAFNICISSLLIVLAMYLPKPLAFS 71

Query: 73  AFPTVLLIATLLRLALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVFLI 132
            FP VLL+ T+ RLAL++++TR +LL        AG+V+EAFGN V+GGN AVGLV+F+I
Sbjct: 72  TFPAVLLLTTMFRLALSISTTRQILLQQD-----AGHVVEAFGNFVVGGNLAVGLVIFMI 126

Query: 133 LMIINFMVVTKGAGRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTKEA 192
           L ++NF+V+TKG+ R++EV+ARFTLDA+PGKQM+ID+DL AGLID +QAR RR  + KE+
Sbjct: 127 LTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDAQQARQRRENLAKES 186

Query: 193 DFYGSMDGASKFVKGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDGLV 252
             +G+MDGA KFVKGDAIA ++I+FIN+IGG +IG++Q  +   +A+ IY++LTIGDGL+
Sbjct: 187 QLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLTIGDGLI 246

Query: 253 AQIPSLLLSIGAAIMVTR-----QNTDEDMGQQVIFQLFDNPKALTITAGILFVMGIVPG 307
           AQIP+LL+S+ A +++TR     Q TD ++G+++  QL   PKA  I++  +    ++PG
Sbjct: 247 AQIPALLISLTAGMIITRVSADGQKTDNNIGREIAEQLTSQPKAWIISSVGMLGFALLPG 306

Query: 308 MPHFAFLFLALLASGAAYWLHRKQKTKAENKNLPAKSDVETPTQRELSWDDVQPVDVIGL 367
           MP   FL ++L++ G+  +   + K              ++  Q  L  DD  P +  G 
Sbjct: 307 MPTLVFLIISLVSLGSGLFQLWRVK--------------QSGLQDALLADDSLPAEQNGY 352

Query: 368 EVGYRLIPL-----------VDKDQGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELT 416
           +   R  P                    L++ ++ +R +L   FGF +P   I  N  + 
Sbjct: 353 QDLRRFNPTRAYLLQFHTVWQGAAAAAVLVQDIRRLRNRLVYHFGFTLPSFDIEFNPNMP 412

Query: 417 PNSYRITLMGVAVGEAEIRPDQELAINPGQVY------GMIDGERTRDPAFGLDAVWIRE 470
            + +R  +  +    A       LA+  GQ+       GM+ G   RD    L   W+  
Sbjct: 413 EDEFRFCVYEIPQLRASFGVPL-LAVPRGQLPEATLDDGMMLGLPARDEHHLL---WLTP 468

Query: 471 DQREHAQALGYTVVDSSTVLATHLSQLLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFV 530
           +     Q    +    + ++ + +   +  + AQ IG +E +++L  L    P+L +  +
Sbjct: 469 EH-PLLQQPELSPWSPTVLILSRMENAIHRSGAQFIGLQETKSILAWLESEQPELAQE-L 526

Query: 531 PDQLSLGVVVKVLQNLLHEAIPIRDIRTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQ 590
              + L     VLQ L  E +P+R +R I + L E     ++ + LT  VR+ LK  I  
Sbjct: 527 QRIMPLSRFASVLQRLASERVPLRSVRPIAEALIEIGQHERDINALTDYVRLELKAQICH 586

Query: 591 EINGVEPELPVITLIPELEQILHQTMQASGGES-AGIEPGLAERLQMALSHATQEQELKG 649
           + +  +  L V  L PE E++L   ++ +  ++   +    A  L   L HA     +  
Sbjct: 587 QYS-QDDSLTVWLLTPETEELLRDALRQTQNDTFFALTQEYAATLLGQLRHAF--PPMVP 643

Query: 650 EPAVLLTSGVLRSTLAKFVKNTIPNLRVLSYQEIPDEKQIRI 691
             A++L +  LRS L   +++   ++ VLS+ E+     I +
Sbjct: 644 PSALILVAQDLRSPLRILLQDEFHHVPVLSFTELESHLSINV 685