Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Rhodanobacter sp. FW510-T8

 Score = 66.2 bits (160), Expect = 1e-15
 Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 414 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 473

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     +  R+ T  E+AK ++M  ++   VL      I+    +G ++   
Sbjct: 474 LNRISRQMLQ----QFGREATPEELAKEMDMPEDKIRKVLKIAKEPISMETPIGDDEDSH 529

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+G  +SP     E    + + + +  L  REA VL + +  ++N    L+E
Sbjct: 530 LGDFI---EDGNASSPIDSATETGLMETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEE 586

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 587 VGKQFDVTRERIRQIEAKALRKLR 610