Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., RNA polymerase sigma factor FliA from Rhodanobacter sp. FW510-T8

 Score =  229 bits (583), Expect = 5e-65
 Identities = 125/246 (50%), Positives = 169/246 (68%), Gaps = 12/246 (4%)

Query: 1   MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK 60
           M+ A  Y Q    ++ +L + +++ LV+RIA+HL+GRLP SV + DLIQAGM+GLLEA +
Sbjct: 1   MSVASEYLQLSRESADEL-VRRHAPLVRRIAYHLMGRLPASVDVGDLIQAGMIGLLEAAR 59

Query: 61  NYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTD 120
           ++   +GASFETYAGIRIRGAMLD++RR DW PRSVH+  RE+++ I  +E E   +  D
Sbjct: 60  HFALDRGASFETYAGIRIRGAMLDELRRTDWTPRSVHRKTREVAETIRQIETETGAEADD 119

Query: 121 AEVAKFLNMSLEQYHSVLMDINCSRIVGI------EDLGVSDDAISPFEEGEDNSPFHGV 174
           AEV + L +S E+YH VL D  CSR++ +      E+ GV D A     +     P   +
Sbjct: 120 AEVIRRLGISAEEYHQVLADAACSRLLSLTASDDGEESGVLDVA-----DENGLGPPESI 174

Query: 175 AEESFRKALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLR 234
             +  R+ALVE+I  LPERE LV+SLYY++ELNLKEIG VLGVSESRV QI  Q++ RLR
Sbjct: 175 ENDGMREALVEAIGELPEREQLVMSLYYEQELNLKEIGAVLGVSESRVCQIHGQAVIRLR 234

Query: 235 TKLSSW 240
            +L+ W
Sbjct: 235 ARLAGW 240