Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 242 a.a., RNA polymerase sigma factor FliA from Rhodanobacter sp000427505 FW510-R12

 Score =  228 bits (580), Expect = 1e-64
 Identities = 123/242 (50%), Positives = 165/242 (68%), Gaps = 4/242 (1%)

Query: 1   MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK 60
           M+ A  Y Q    ++ +L + +++ LV+RIA+HL+GRLP SV + DLIQAGM+GLLEA +
Sbjct: 1   MSVASEYLQLSRESADEL-VRRHAPLVRRIAYHLMGRLPASVDVGDLIQAGMIGLLEAAR 59

Query: 61  NYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTD 120
           ++   KGASFETYAGIRIRGAMLD++RR DW PRSVH+  RE+++ I  +E E   +  D
Sbjct: 60  HFAHDKGASFETYAGIRIRGAMLDELRRTDWTPRSVHRKTREVAETIRQIETETGAEADD 119

Query: 121 AEVAKFLNMSLEQYHSVLMDINCSRIVGI--EDLGVSDDAISPFEEGEDNSPFHGVAEES 178
           AEV + L +S E+YH VL D  C R++ +   D G     +   +EG    P   V  + 
Sbjct: 120 AEVIRRLGISAEEYHQVLADAACVRLLSLTASDDGEESTVLDVVDEG-SLGPAENVERDG 178

Query: 179 FRKALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLS 238
            R+AL  +I  LPERE LV+SLYY++ELNLKEIG VLGVSESRV QI  Q++ RLR +L+
Sbjct: 179 MREALAGAIGGLPEREQLVMSLYYEQELNLKEIGAVLGVSESRVCQIHGQAVIRLRARLT 238

Query: 239 SW 240
            W
Sbjct: 239 GW 240