Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., RNA polymerase sigma factor RpoD from Rhodanobacter sp000427505 FW510-R12

 Score = 65.9 bits (159), Expect = 2e-15
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 413 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 472

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     +  R+ T  E+AK + M  ++   VL      I+    +G ++   
Sbjct: 473 LNRISRQMLQ----QFGREATPEELAKEMEMPEDKIRKVLKIAKEPISMETPIGDDEDSH 528

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+G  +SP     E    + + + +  L  REA VL + +  ++N    L+E
Sbjct: 529 LGDFI---EDGNASSPIDSATETGLMETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEE 585

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 586 VGKQFDVTRERIRQIEAKALRKLR 609