Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 406 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 465

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     E+ R+PT  E+ + + M  ++   VL      I+    +G ++   
Sbjct: 466 LNRISRQMLQ----EMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSH 521

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+    SP      ES ++A  + +  L  REA VL + +  ++N    L+E
Sbjct: 522 LGDFI---EDSTMQSPIDVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEE 578

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 579 VGKQFDVTRERIRQIEAKALRKLR 602