Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., flagellar biosynthesis sigma factor from Pseudomonas simiae WCS417

 Score =  246 bits (629), Expect = 2e-70
 Identities = 131/234 (55%), Positives = 164/234 (70%), Gaps = 12/234 (5%)

Query: 14  NSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETY 73
           +SQ   +E+Y+ LVKRIA+HL+ RLP SV +EDLIQAGM+GLLE    YD SKGASFETY
Sbjct: 15  DSQGELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDASKGASFETY 74

Query: 74  AGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQ 133
           AGIRIRGAMLD++R+GDW PRSVH++ R +S AI  +E +  RD  D EVA  L +SL+ 
Sbjct: 75  AGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAELQLSLDD 134

Query: 134 YHSVLMDINCSRIVGIEDL-------GVSDDAISPFEEGEDNSPFHGVAEESFRKALVES 186
           Y+ +L D   SR+   +DL       G+ +D  S   E     P   + +E F+ AL ++
Sbjct: 135 YYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASAHME-----PSRDLEDERFQGALADA 189

Query: 187 IKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW 240
           I +LPERE LVL+LYYDEELNLKEIGEVLGVSESRVSQ+ SQ   RLR +L  W
Sbjct: 190 IANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGEW 243