Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 228 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

 Score = 65.1 bits (157), Expect = 1e-15
 Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 12/213 (5%)

Query: 42  VLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNR 101
           V  ED +Q   +GL+EA   +D  +GA F+T+A  R++GA+L+ + R     + +    R
Sbjct: 15  VEFEDYLQFARIGLIEAIDRFDPLRGAQFKTFATKRVQGAILNGLARFTEKNQQIALSMR 74

Query: 102 EISQAI-AVLEGELNRDP-----TDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVS 155
              + + AV +      P     TD+  +      L +Y +  + I  +  V +ED G+ 
Sbjct: 75  LRRERLEAVKDAAAQAAPGAAQGTDSPPSGRQPEELFRYLAE-VGIGLALSVMLEDTGMI 133

Query: 156 DDAISPFEEGEDNSP----FHGVAEESFRKALVESIKSLPEREALVLSLYYDEELNLKEI 211
           D   +P + G+  SP    F        R  L   +  L E++ +V+  +Y +E+  +EI
Sbjct: 134 DSG-APGDTGQLPSPEVSYFRQSEIAQLRSVLRNLVDRLGEQQRMVIHQHYLQEVPFEEI 192

Query: 212 GEVLGVSESRVSQILSQSMQRLRTKLSSWTRND 244
              +G++  RVSQ+  Q++ RLR  L    R D
Sbjct: 193 ARRVGLTRGRVSQLHRQALGRLRELLGKDARFD 225