Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., RNA polymerase sigma factor for flagellar operon from Variovorax sp. SCN45

 Score =  189 bits (480), Expect = 4e-53
 Identities = 105/241 (43%), Positives = 150/241 (62%), Gaps = 12/241 (4%)

Query: 7   YDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSK 66
           Y   G +    L L ++  LV+RIA  ++ +LP SV ++DLIQAGM+GLL+A   Y  ++
Sbjct: 2   YTAQGTIEKSHL-LAQHQPLVRRIALQMMAKLPASVELDDLIQAGMLGLLDASSRYQDNR 60

Query: 67  GASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126
           GA FET+   RIRGAMLD++R  DW  R + +  R I +AI  L   L R P++ E+AK 
Sbjct: 61  GAQFETFVSQRIRGAMLDELRANDWGSRGLRQSARGIEKAIHALGHRLGRAPSEGEIAKE 120

Query: 127 LNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPF----------EEGEDNSPFHGVAE 176
           L M LE Y S+L +I   +++ +ED    DD  +PF          +    + P   + E
Sbjct: 121 LKMDLEAYQSMLQEIQGCQLLYVEDF-AKDDPDNPFLDIHSKDARRDRRGGDDPLEQLLE 179

Query: 177 ESFRKALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTK 236
             FR  LV++I +LPER+ L+L+LYY+EELNL+EIG +L VS+SRV Q+ SQ++ RLR K
Sbjct: 180 SGFRHQLVDAISALPERDQLLLNLYYEEELNLREIGAILEVSQSRVCQLHSQAISRLRAK 239

Query: 237 L 237
           L
Sbjct: 240 L 240