Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., RNA polymerase sigma factor RpoD from Variovorax sp. SCN45

 Score = 57.8 bits (138), Expect = 6e-13
 Identities = 60/247 (24%), Positives = 116/247 (46%), Gaps = 21/247 (8%)

Query: 1   MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK 60
           +NK +   +  + ++++  +E    LV  IA     R    +   DLIQ G +GL++A  
Sbjct: 523 INKRMNEGESSSRDAKKEMIEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVD 579

Query: 61  NYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHKHNREISQAIAVLEGE 113
            ++  +G  F TYA   IR A+   + D  R   +P     +++K NR   Q +     E
Sbjct: 580 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQ----E 635

Query: 114 LNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDA-ISPF-EEGEDNSPF 171
              +P    +A  + +  ++   + M I    I     +G  DD+ +  F E+  + +P 
Sbjct: 636 FGFEPDAGILAAKMEIPEDKIRKI-MKIAKEPISMETPIGDDDDSHLGDFIEDSSNTAPI 694

Query: 172 HGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIGEVLGVSESRVSQILS 227
               +   R  + + + SL  REA VL + +  E++    L+E+G+   V+  R+ QI +
Sbjct: 695 EAAMQAGLRDVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEA 754

Query: 228 QSMQRLR 234
           +++++L+
Sbjct: 755 KALRKLK 761