Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 245 a.a., RNA polymerase sigma factor for flagellar operon from Sphingobium sp. HT1-2

 Score =  149 bits (375), Expect = 7e-41
 Identities = 89/236 (37%), Positives = 135/236 (57%), Gaps = 4/236 (1%)

Query: 5   LTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDG 64
           LTY + G  NS +    +Y  LV++IA H+ GR+  ++ +EDL+Q GMV L+E+  +++ 
Sbjct: 13  LTYGRAGLANSPEQLARRYMPLVRKIAWHVHGRVSSAIEVEDLLQIGMVALVESANSFE- 71

Query: 65  SKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVA 124
            +G  F +YA +R+RGAM+D +RR   + RS     ++++   A LE +L R P +AE+A
Sbjct: 72  DRGLGFASYAQLRVRGAMIDHLRRHSTLCRSAMATRKKLAATRAKLEQKLGRAPLEAEMA 131

Query: 125 KFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFRKALV 184
             L M    Y          +   I++  V  D    F + ED +    +  ES + AL 
Sbjct: 132 AELGMDAADYREAADGAEMVQHTSIDE--VYSDQSMWFADVEDRAD-DIMERESLKGALA 188

Query: 185 ESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW 240
           + I  LPEREALVL LY+ EELNL+EIG+ L +  +RV QI   ++ +LR KL  W
Sbjct: 189 KCIGELPEREALVLQLYFVEELNLEEIGQTLDIGAARVCQIKKSALDKLRGKLIDW 244