Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

 Score =  249 bits (637), Expect = 3e-71
 Identities = 129/229 (56%), Positives = 163/229 (71%), Gaps = 2/229 (0%)

Query: 14  NSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETY 73
           ++Q   +E+Y+ LVKRIA+HL+ RLP +V +EDLIQAGM+GLLE    YD SKGASFETY
Sbjct: 15  DAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFETY 74

Query: 74  AGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQ 133
           AGIRIRGAMLD++R+GDW PRSVH++ R +S A+  +E    RD  D EVA  L +SL+ 
Sbjct: 75  AGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAELQLSLDD 134

Query: 134 YHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDN--SPFHGVAEESFRKALVESIKSLP 191
           Y+ +L D   SR+   +DL    +     E+G      P  G+ EE F+ AL E+I +LP
Sbjct: 135 YYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALTEAIANLP 194

Query: 192 EREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW 240
           ERE LVL+LYYDEELNLKEIGEVLGVSESRVSQ+ SQ   RLR++L  W
Sbjct: 195 ERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEW 243