Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 82.8 bits (203), Expect = 7e-21
 Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 32/209 (15%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPR----SVHKHNR 101
           DLI  G +GL++A K +D ++G  F +YA   IR ++L  +     + R     V   N+
Sbjct: 78  DLINEGNLGLIKAAKRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNRVGSLNK 137

Query: 102 EISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISP 161
            IS++ + LE +  R+P+  E+A+ L ++  +    L          I    VS DA  P
Sbjct: 138 -ISKSFSELEQKFEREPSPEEIAEVLELTTAEVVDTLK---------ISGRHVSVDA--P 185

Query: 162 FEEGEDN------------SPFHGVAEESFRKALVESIKSLPEREALVLSLYY----DEE 205
           F +GE+N            SP  G+  +S RK +  ++ +L +REA V++LY+    +  
Sbjct: 186 FVQGEENRLLDVLENEDEESPDMGLMNDSLRKEVQRALSTLTKREADVITLYFGLNGEHS 245

Query: 206 LNLKEIGEVLGVSESRVSQILSQSMQRLR 234
           L L+EIGE   ++  RV QI  ++++RLR
Sbjct: 246 LTLEEIGEKFNLTRERVRQIKEKAIRRLR 274