Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., RNA polymerase sigma factor for flagellar operon from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  138 bits (347), Expect = 1e-37
 Identities = 81/224 (36%), Positives = 133/224 (59%), Gaps = 8/224 (3%)

Query: 16  QQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAG 75
           +Q  L  ++ LV+R    L  ++  ++  +D++Q G++GLLEA + Y G     F  +AG
Sbjct: 25  EQRHLLAFTPLVRRTVRQLSSQVGGAMDRDDMMQIGLMGLLEALRRY-GEPDERFPAFAG 83

Query: 76  IRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYH 135
           +R+RGA+LD++RR DW PRSV + +  +   +  L   L R+PT+AEV   L++S E Y 
Sbjct: 84  LRVRGAILDELRRQDWRPRSVRQESFRLKAEVRALTKRLGREPTEAEVLAELDISPEAYL 143

Query: 136 SVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREA 195
           +   D N   +   +DL    D +S  E     SP    AE   +++L +++ +L ERE 
Sbjct: 144 AYQQDSNAETLASFDDL---FDTLSN-EASSQRSP---EAELVLKRSLQQALGTLSEREQ 196

Query: 196 LVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSS 239
            V+ LYY+ EL+LKEI  VLG++E+R+ QI   ++Q+++T L +
Sbjct: 197 RVIQLYYEYELSLKEIAAVLGLTEARICQINKAALQKMKTVLQT 240