Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 738 a.a., RNA polymerase sigma factor RpoD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 61.2 bits (147), Expect = 6e-14
 Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 18/202 (8%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 527 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 586

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDA 158
            NR   Q +     E   +P  + +A+ + M  ++   + M I    I     +G  DD+
Sbjct: 587 MNRISRQHLQ----EFGFEPDASILAEKMEMPEDKIRKI-MKIAKEPISMETPIGDDDDS 641

Query: 159 -ISPFEEGEDN-SPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIG 212
            +  F E + N +P     +   R+ + E + SL  REA VL + +  E++    L+E+G
Sbjct: 642 HLGDFIEDQANTAPIEAAMQAGLREVVKEILDSLTPREAKVLRMRFGIEMSTDHTLEEVG 701

Query: 213 EVLGVSESRVSQILSQSMQRLR 234
           +   V+  R+ QI S+++++L+
Sbjct: 702 KQFDVTRERIRQIESKAVRKLK 723