Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 62.4 bits (150), Expect = 2e-14
 Identities = 57/204 (27%), Positives = 99/204 (48%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 405 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 464

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSV----LMDINCSRIVGIEDLGV 154
            NR   Q +     E+ R+PT  E+A+ + M  ++   V       I+    +G ++   
Sbjct: 465 LNRISRQMLQ----EMGREPTPEELAERMLMPEDKIRKVPKIAKEPISMETPIGDDEDSH 520

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+     P      ES R A  + +  L  REA VL + +  ++N    L+E
Sbjct: 521 LGDFI---EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEE 577

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 578 VGKQFDVTRERIRQIEAKALRKLR 601