Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., RNA polymerase sigma factor for flagellar operon from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  197 bits (502), Expect = 1e-55
 Identities = 112/235 (47%), Positives = 159/235 (67%), Gaps = 7/235 (2%)

Query: 7   YDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSK 66
           Y   G ++   L+ ++Y  LV+  A  L  RLP SV ++DL+QAG +GLL A   YD  +
Sbjct: 5   YTAEGVMDKHSLW-QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQ 63

Query: 67  GASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126
           G +F TYA  RIRGAMLD++R  DWVPRSV ++ RE++QA+  LE EL R+ T+ EVA+ 
Sbjct: 64  GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEVAER 123

Query: 127 LNMSLEQYHSVLMDINCSRIVGI----EDLGVSDDAISPFEEGEDNSPFHGVAEESFRKA 182
           L + + +Y  +L+D N S++       E+ G S + ++  EE +  +P H + E   R+ 
Sbjct: 124 LGIPVAEYRQMLLDTNNSQLFSYDEWREEHGDSIELVT--EEHQQENPLHQLLEGDLRQR 181

Query: 183 LVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKL 237
           ++++I+SLPERE LVL+LYY EELNLKEIG VL V ESRVSQ+ SQ+++RLRTKL
Sbjct: 182 VMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236