Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) from Escherichia coli BW25113

 Score =  193 bits (491), Expect = 2e-54
 Identities = 109/235 (46%), Positives = 159/235 (67%), Gaps = 7/235 (2%)

Query: 7   YDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSK 66
           Y   G ++   L+ ++Y  LV+  A  L  RLP SV ++DL+QAG +GLL A + YD  +
Sbjct: 5   YTAEGVMDKHSLW-QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63

Query: 67  GASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126
           G +F TYA  RIRGAMLD++R  DWVPRSV ++ RE++QAI  LE EL R+ T+ EVA+ 
Sbjct: 64  GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123

Query: 127 LNMSLEQYHSVLMDINCSRIVGI----EDLGVSDDAISPFEEGEDNSPFHGVAEESFRKA 182
           L + +  Y  +L+D N S++       E+ G S + ++  ++ +  +P   + + + R+ 
Sbjct: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVT--DDHQRENPLQQLLDSNLRQR 181

Query: 183 LVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKL 237
           ++E+I++LPERE LVL+LYY EELNLKEIG VL V ESRVSQ+ SQ+++RLRTKL
Sbjct: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236