Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., RNA polymerase sigma factor RpoS from Erwinia tracheiphila SCR3

 Score = 64.3 bits (155), Expect = 3e-15
 Identities = 60/240 (25%), Positives = 118/240 (49%), Gaps = 16/240 (6%)

Query: 11  GNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASF 70
           G++ S++  +E    LV +IA     R    + + DLI+ G +GL+ A + +D  KG  F
Sbjct: 86  GDIPSRRRMIESNLRLVVKIARRYSNR---GLALLDLIEEGNLGLIRAVEKFDPEKGFRF 142

Query: 71  ETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFL 127
            TYA   IR  +   + +  R   +P  + K      +    L  +L+ +P+  E+A+ L
Sbjct: 143 STYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELAHKLDHEPSAEEIAEQL 202

Query: 128 NMSLEQYHSVLMDINCSRIVGIEDL---GVSDDA-ISPFEEGEDNSPFHGVAEESFRKAL 183
           +  ++   S ++ +N  RI  ++     G SD A +    + +DN P     ++  ++++
Sbjct: 203 DKPVDDV-SRMLRLN-ERITSVDTTLLGGDSDKALLDILADEKDNGPEDCTQDDDMKQSI 260

Query: 184 VESIKSLPEREALVLSLYYD----EELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSS 239
           V+ +  L  ++  VL+  +     E   L+++G  +G++  RV QI  + ++RLR  L +
Sbjct: 261 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGSEIGLTRERVRQIQVEGLRRLREILQA 320