Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., RNA polymerase sigma factor, FliA/WhiG family from Enterobacter asburiae PDN3

 Score =  198 bits (503), Expect = 9e-56
 Identities = 111/235 (47%), Positives = 161/235 (68%), Gaps = 7/235 (2%)

Query: 7   YDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSK 66
           Y   G ++   L+ ++Y  LV+  A  L  RLP SV ++DL+QAG +GLL A   YD  +
Sbjct: 5   YTAEGVMDKHSLW-QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQ 63

Query: 67  GASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126
           G +F TYA  RIRGAMLD++R  DWVPRSV ++ RE++ A+  LE EL R+ T+ EVA+ 
Sbjct: 64  GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAHAMGQLEQELGRNATETEVAER 123

Query: 127 LNMSLEQYHSVLMDINCSRIVGI----EDLGVSDDAISPFEEGEDNSPFHGVAEESFRKA 182
           L +++E+Y  +L+D N S++       E+ G S + ++  +E +  +P H + E + R+ 
Sbjct: 124 LGIAVEEYRQMLLDTNNSQLFSYDEWREEHGDSIELVT--DEHQQENPLHHLMEGNLRQR 181

Query: 183 LVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKL 237
           ++E+I++LPERE LVL+LYY EELNLKEIG VL V ESRVSQ+ SQ+++RLRTKL
Sbjct: 182 VMEAIEALPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236