Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., RNA polymerase sigma factor RpoD from Escherichia coli ECRC100

 Score = 65.1 bits (157), Expect = 3e-15
 Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 403 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 462

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     E+ R+PT  E+A+ + M  ++   VL      I+    +G ++   
Sbjct: 463 LNRISRQMLQ----EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 518

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+     P      ES R A  + +  L  REA VL + +  ++N    L+E
Sbjct: 519 LGDFI---EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEE 575

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 576 VGKQFDVTRERIRQIEAKALRKLR 599