Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 287 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 63/209 (30%), Positives = 109/209 (52%), Gaps = 32/209 (15%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPR----SVHKHNR 101
           DLI  G +GL++A + +D ++G  F +YA   IR ++L  +     + R     V   N+
Sbjct: 78  DLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNRVGSLNK 137

Query: 102 EISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISP 161
            IS+  + LE    R+P+  E+A+ L ++  +       ++  +I G     VS DA  P
Sbjct: 138 -ISKTFSELEQRFEREPSPEELAEVLEVTAGEV------VDTMKISGRH---VSMDA--P 185

Query: 162 FEEGEDNS------------PFHGVAEESFRKALVESIKSLPEREALVLSLYY----DEE 205
           F +GE+NS            P  G+  +S RK +  ++ +L +REA V++LY+    +  
Sbjct: 186 FVQGEENSLLDVLENDGEEKPDDGLMNDSLRKEVQRALSTLTQREADVITLYFGLNGEHA 245

Query: 206 LNLKEIGEVLGVSESRVSQILSQSMQRLR 234
           + L+EIGE   ++  RV QI  ++++RLR
Sbjct: 246 MTLEEIGEKFNLTRERVRQIKEKAIRRLR 274