Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 286 a.a., RNA polymerase sigma factor RpoD/SigA from Phocaeicola dorei CL03T12C01

 Score = 73.9 bits (180), Expect = 3e-18
 Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 31/210 (14%)

Query: 44  IEDLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPR----SVHKH 99
           + DLI  G +GL++A + +D ++G  F +YA   IR ++L  +     + R     V   
Sbjct: 76  LPDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGSL 135

Query: 100 NREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAI 159
           N+ IS+A +  E E  R P+  E+A  L + +++    L          +    +S DA 
Sbjct: 136 NK-ISKAFSKFEQENERRPSPEELADELEIPVDKISDTLK---------VSGRHISVDA- 184

Query: 160 SPFEEGEDNSPF------------HGVAEESFRKALVESIKSLPEREALVLSLYYD---E 204
            PF EGEDNS                +  ES  + +  ++ +L ERE  ++ +++    +
Sbjct: 185 -PFVEGEDNSLLDVLVNDDSPMADRSLVNESLAREIDRALSTLTEREKDIIQMFFGINTQ 243

Query: 205 ELNLKEIGEVLGVSESRVSQILSQSMQRLR 234
           E+ L+EIG+  G++  RV QI  ++++RLR
Sbjct: 244 EMTLEEIGDKFGLTRERVRQIKEKAIRRLR 273