Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., Sigma-F factor from Alteromonas macleodii MIT1002

 Score =  283 bits (725), Expect = 2e-81
 Identities = 139/243 (57%), Positives = 190/243 (78%), Gaps = 3/243 (1%)

Query: 2   NKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKN 61
           +KA  Y Q      +   +E+++ LVKRIAHHLI RLP SVL++DLIQ+GM+GLLEA +N
Sbjct: 3   SKAAAYQQQ---TDKAQLVERHAPLVKRIAHHLIARLPASVLVDDLIQSGMIGLLEAARN 59

Query: 62  YDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDA 121
           +DGSKGASFET+AGIRIRGAMLD+IR+GDW PRSVH++ R I++AI+ +E E  RD  D+
Sbjct: 60  FDGSKGASFETFAGIRIRGAMLDEIRKGDWTPRSVHRNGRAITEAISQVESETGRDARDS 119

Query: 122 EVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFRK 181
           ++A  LN+SL+ YH +L ++N  ++VGIEDLGVS+D IS  +    ++P   + + +F+K
Sbjct: 120 DIADKLNVSLQDYHQMLNEVNAGKLVGIEDLGVSEDVISTEQNRGSDAPLEDLMQGAFQK 179

Query: 182 ALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSWT 241
           AL  +I +LPEREA+VLSLYYDEELNL+EIGEVL VSESRVSQI SQ+M +L++++ SW 
Sbjct: 180 ALAHAITTLPEREAIVLSLYYDEELNLREIGEVLDVSESRVSQIHSQAMLKLKSRMKSWQ 239

Query: 242 RND 244
            ++
Sbjct: 240 ADE 242