Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., Sigma-70 from Alteromonas macleodii MIT1002

 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 400 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 459

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     E+ R+PT  E+++ + M  ++   VL      I+    +G ++   
Sbjct: 460 LNRISRQMLQ----EMGREPTPEELSERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 515

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+     P       S + A  E +  L  REA VL + +  ++N    L+E
Sbjct: 516 LGDFI---EDSTIIQPLDSATGGSLKDATQEVLAGLTAREAKVLRMRFGIDMNTDHTLEE 572

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 573 VGKQFDVTRERIRQIEAKALRKLR 596