Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

 Score = 66.2 bits (160), Expect = 2e-15
 Identities = 56/201 (27%), Positives = 99/201 (49%), Gaps = 16/201 (7%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P  + +   +
Sbjct: 474 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 533

Query: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGVSDDA 158
           I +    +  E+ R+PT  E+A+ L M LE+   VL      I+    VG E+    D  
Sbjct: 534 IVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEE----DSH 589

Query: 159 ISPFEEGEDN-SPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIGE 213
           +  F E ++   P     + + R+     + SL  RE  VL + +   +N    L+E+G+
Sbjct: 590 LGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQ 649

Query: 214 VLGVSESRVSQILSQSMQRLR 234
              V+  R+ QI ++++++L+
Sbjct: 650 QFSVTRERIRQIEAKALRKLK 670