Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., RNA polymerase sigma factor RpoD from Acinetobacter radioresistens SK82

 Score = 70.9 bits (172), Expect = 6e-17
 Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 21/216 (9%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P  + +   +
Sbjct: 418 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 477

Query: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGVSDDA 158
           I++    L  E+ R+PT  E+ + L M   +   VL      I+    +G ++    D  
Sbjct: 478 INRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDE----DSH 533

Query: 159 ISPFEEGED-NSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEEL----NLKEIGE 213
           +  F E ++  SP      E  ++A  E +++L EREA VL + +  ++     L+E+G+
Sbjct: 534 LGDFIEDQNITSPVDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDHTLEEVGK 593

Query: 214 VLGVSESRVSQILSQSMQRLR-----TKLSSWTRND 244
              V+  R+ QI ++++++LR       L S+  ND
Sbjct: 594 QFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEND 629