Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 890 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  309 bits (791), Expect = 5e-88
 Identities = 166/431 (38%), Positives = 263/431 (61%), Gaps = 8/431 (1%)

Query: 358 PAVAKEEPAKAPAPAAVKDSDESREVAAAGGAKKAQTESTVRVDTSTLDTIMNMVGELVL 417
           PA A   P K PAPA  K   ++   AA  G        ++RV    L+ +M MV ELVL
Sbjct: 173 PAPAPAAPPK-PAPAMPKADADATHAAAQAGEAHGVAAQSIRVHVGVLEQLMTMVSELVL 231

Query: 418 VRNRLLSLGLNSNDEEMSKAVANLDVVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARS 477
            RN+L+ +    ++ E   ++  L  VT +LQ AVM+TRMQPI   + + PR+VRDLA+ 
Sbjct: 232 TRNQLMEIARRHDEPEYKVSLQRLSNVTGELQEAVMRTRMQPIGNAWQKLPRIVRDLAQE 291

Query: 478 LNKEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDERAKNGKSRTGKVILS 537
           L K+I+LE  G +T+LD+ +++ + DPL H+VRNS DHG+EMP++R   GKS  G + LS
Sbjct: 292 LGKQIELEQVGADTELDRQVLDQIKDPLTHMVRNSADHGLEMPEQRRAAGKSERGLIRLS 351

Query: 538 ASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNKECFNLIFMPGFSSKE 597
           A  EG H+ + I DDG G+D  +++  A++ G+  E    ++ + + F  IF  GFS+ +
Sbjct: 352 AYHEGGHVIVEISDDGRGLDVARIKQKALENGLATEAELAKMPDSQVFRFIFHAGFSTAQ 411

Query: 598 KITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPLTLAILPTLMVGVAGHP 657
           K+T++SGRGVGMDVV++ + ++ G++D+ S  G+G+   IK+PLTLAI+P L+V  AG  
Sbjct: 412 KVTNVSGRGVGMDVVRSNLESIGGTVDVRSRQGEGSTFVIKIPLTLAIVPALIVRAAGER 471

Query: 658 FALPLASVNEIFHLDLRRTNVV---DGQLTIIVREKSIPLFYLQNWLA---PKKGKVQLR 711
           FALP ++V E+  +     + +   +    + +R++ +P+  L   L     + G+ +  
Sbjct: 472 FALPQSAVEELVRVQAGSDHEITWLNNSPVLGLRDRLLPIVSLGALLGLSPERDGRDEAL 531

Query: 712 QGHGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATITSDGHIALILD 771
                +V++++G Q  G+VV+ +   EE+V+KP+   L+  P +SG+TI  DG + +ILD
Sbjct: 532 WERALIVVMKVGHQTFGVVVEAVSHTEEIVVKPMASALRQLPMVSGSTILGDGRVIMILD 591

Query: 772 VPDLLKQYAAA 782
            P  L Q+AAA
Sbjct: 592 -PAGLAQHAAA 601



 Score = 75.9 bits (185), Expect = 9e-18
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 7   EDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELVET 66
           +D+L++FL E  E L++   +LV+ E +P +  +LN IFR  HT+KG  GF+ L  L   
Sbjct: 2   DDLLREFLTETSESLDVADVELVKFEQDPNNAQILNNIFRLVHTIKGTCGFIGLPRLASL 61

Query: 67  CHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQP--ADPELLDELH 124
            H AE + D  R G R V+   +  +L  +D +    + V+E E  +P   D +L+  L 
Sbjct: 62  AHAAETLMDRFREG-RPVTTDAVGLVLSTIDRIKLLLQHVEETEGSEPEGEDRDLISLLE 120

Query: 125 RLSKPASEDEDEAAEAHFDEPEEELVEEII 154
            +++           A   +P + L   ++
Sbjct: 121 AMAEAVDAPAAPPPPAPPPQPAQTLERPLL 150



 Score = 33.9 bits (76), Expect = 4e-05
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 659 ALPLASVNEIFHLDLRRTNVVDGQLTIIVREKSIPLFYLQNWLAPKKGKVQLRQGHGHVV 718
           A+PL  V  I  L++ R   V+G   +  R   IP+ Y    +       ++  G   ++
Sbjct: 639 AVPLGLVTRIEELEVARIERVNGYPVLQYRGALIPVLYANEEVQ------RVAAGTQPML 692

Query: 719 IVQIGSQRVGLVVDTLIGQEEVVIKPLDKLL--QGTPGMSGATITSDGHIALILDV 772
           +   G + +GLVVD ++   ++V   LD  L     P + GA + S G    ILDV
Sbjct: 693 VFADGGRVMGLVVDEIV---DIVEAELDMELSPSNMPEVLGAAVLS-GQATEILDV 744