Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 754 a.a., chemotaxis protein CheA from Pseudomonas simiae WCS417

 Score =  214 bits (545), Expect = 1e-59
 Identities = 144/487 (29%), Positives = 235/487 (48%), Gaps = 61/487 (12%)

Query: 341 PSTKPAAKPVAKPAAAKPAVAKEEPAKAPAPAAVKDSDESREVAAAGGAKKAQTESTVRV 400
           PS  P   P  +P    P V    P   PAP  V +     +    GG      E  +RV
Sbjct: 129 PSQAPVKAPPPEPV---PVVEALPPEPEPAPPVVAEPPRHNKRMTEGG------ERVLRV 179

Query: 401 DTSTLDTIMNMVGELVLVRNRLLSL----------------------------GLNSNDE 432
               L++++++  + ++   RL                                LN   +
Sbjct: 180 TAERLNSLLDLSSKSLVETQRLKPYLASLQRLKRIQSQSVRALDTLDGQLKTENLNLEAQ 239

Query: 433 E--------MSKAVANLDVVTADLQ--------------GAVMKTRMQPIKKVFGRFPRV 470
           E        +S+A A L   TA+L                  +  RM+P   V     R+
Sbjct: 240 EALADTRRLLSEAQALLAEKTAELDEFGWQAGQRAQVLYDTALACRMRPFADVLAGQVRM 299

Query: 471 VRDLARSLNKEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDERAKNGKSR 530
           VRDL RSL K++ LE+ G++T +D++++E L  PL HL+RN+VDHGIEMP++R   GK  
Sbjct: 300 VRDLGRSLGKQVRLEIEGDKTQVDRDVLEKLEAPLTHLLRNAVDHGIEMPEQRLLAGKPA 359

Query: 531 TGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNKECFNLIFM 590
            G + L AS +   + L + DDG G+D ++LRG  V R +   + A RL+ +E    +F+
Sbjct: 360 EGLIRLRASHQAGLLVLELSDDGNGVDLERLRGTIVDRHLSPLETAQRLSEEELLTFLFL 419

Query: 591 PGFSSKEKITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPLTLAILPTLM 650
           PGFS ++K+T++SGRGVG+D V+  +  L G++ ++ T G+G++  ++VPLTL+++ +L+
Sbjct: 420 PGFSLRDKVTEVSGRGVGLDAVQHMVRQLRGAVVLEQTAGQGSRFHLEVPLTLSVVRSLV 479

Query: 651 VGVAGHPFALPLASVNEIFHLDLRRTNVVDGQLTIIVREKSIPLFYLQNWLAPKKGKVQL 710
           V V    +A PLA +  +  L       ++G+       + + L      L    G  Q 
Sbjct: 480 VEVGEEAYAFPLAHIERMCDLAPDDIVQLEGRQHFWHEGRHVGLVAASQLLQRPTG--QN 537

Query: 711 RQGHGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATITSDGHIALIL 770
                 VV+++      G+ V+  IG+  +V+ PLD  L     +S   +  DG + LI+
Sbjct: 538 PSDTLKVVVIRERDAVYGIAVERFIGERTLVVLPLDDRLGKVQDISAGALLDDGSVVLIV 597

Query: 771 DVPDLLK 777
           DV D+L+
Sbjct: 598 DVEDMLR 604



 Score = 50.4 bits (119), Expect = 3e-10
 Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 11/149 (7%)

Query: 6   DEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELVE 65
           D  +L+ F +EA    ++LS  L+ LE NP   D L A  R  H++KG A  + +   V 
Sbjct: 8   DASLLELFSLEADAQTQVLSAGLLALERNPTQADQLEACMRAAHSLKGAARIVGVDAGVS 67

Query: 66  TCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPE------- 118
             H  E+     +  + ++ P  +D +L+  D +    R       + PAD E       
Sbjct: 68  VSHVMEDCLVSAQESRLYLQPEHIDALLQGTDLL---MRIATPGNNVGPADIEAYVALME 124

Query: 119 -LLDELHRLSKPASEDEDEAAEAHFDEPE 146
            LLD      K    +     EA   EPE
Sbjct: 125 RLLDPSQAPVKAPPPEPVPVVEALPPEPE 153