Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., hybrid sensor histidine kinase/response regulator from Magnetospirillum magneticum AMB-1

 Score =  236 bits (601), Expect = 4e-66
 Identities = 163/539 (30%), Positives = 273/539 (50%), Gaps = 42/539 (7%)

Query: 269 STPKATETPKPA--AAKSAPGGDDLM-------TDEEFEKLLDELHGSGKGPSVEELEMA 319
           STP  +ET      +A +  G   ++       T  + E +L  L       S E   + 
Sbjct: 32  STPADSETINAVFRSAHTVKGSSRMLKLIPITETAHKVEDVLGALRDGSLSWSPELRRLL 91

Query: 320 TRPVASSPVSSDAKASAEASAPSTKPAAKPVAKPAAAKPAVAKEEPAKAPAPAAVKDSDE 379
            R V +  +S+   A A+ + P+    A   A  AA +      EP  APAPA+   + E
Sbjct: 92  QRGVDA--LSAQVDAVADGNPPAEPDPALCAALAAALRGPQPATEPPPAPAPASAPPAAE 149

Query: 380 SREVAAAGGAKKAQTESTVRVDTSTLDTIMNMVGELVL----VRNRLLSL---------- 425
               A      + ++  TVRV  + LD ++ ++GE+V     +R RL  +          
Sbjct: 150 PPPQAEV----RLKSADTVRVQLTKLDELIRLMGEVVSSHARLRQRLTDIRQIERETQDR 205

Query: 426 ----GLNSNDEEMSKAVANLDVVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKE 481
                L     ++ + V + +++  +L    +  RM P+  V     R++RDL RSL K+
Sbjct: 206 GEAAALTGFARDLREDVFSQELLMDELHAKALVMRMLPLAIVLEPAARLIRDLGRSLGKD 265

Query: 482 IDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDERAKNGKSRTGKVILSASQE 541
           ++  + G E +LD+ L++ L DP++HL+RNSVDHGIE    R   GK   G + LSA Q+
Sbjct: 266 VECVVGGTEIELDRQLIDRLNDPIVHLLRNSVDHGIEDAATRQAAGKPPFGTIRLSARQD 325

Query: 542 GDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNKECFNLIFMPGFSSKEKITD 601
           G  + + + DDG G+    +R  AV++G++  + A  + + E  +LIF PGFS+   IT+
Sbjct: 326 GGWVLIEVADDGGGLPLAAIRDKAVRKGLLSAEQAAAMPDSEAIDLIFSPGFSTSSIITE 385

Query: 602 ISGRGVGMDVVK-TAINTLNGSIDIDSTMGKGTKITIKVPLTLAILPTLMVGVAGHPFAL 660
           +SGRGVGMDVVK T ++ L G I +++  GKGT   +++PL+LA++  L+V   G  F  
Sbjct: 386 VSGRGVGMDVVKRTIVDDLQGVIGVETVPGKGTTFALRLPLSLAVMRVLVVSAGGESFGF 445

Query: 661 PLASVNEIFHLDLRRTNVVDGQLTIIVREKSIPLFYLQNWL---APKKGKVQLRQGHGHV 717
               V ++  L   R   V  +  +++  + IP+  L   L     +  +  LR     +
Sbjct: 446 TAQYVAQLLELPPERLLTVAERDAVVIDNEFIPVVSLATLLGLPGARPARPVLR-----L 500

Query: 718 VIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATITSDGHIALILDVPDLL 776
           V+V++ ++++ L+VD LI + ++VIKPL + L+  P ++G  +T    +  +L  P LL
Sbjct: 501 VVVRVRNEKLALLVDELIDERDMVIKPLPEHLRHLPLVAGMVMTGRNTLVSVLHAPVLL 559



 Score = 77.8 bits (190), Expect = 2e-18
 Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 33/225 (14%)

Query: 13  FLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELVETCHGAEN 72
           F+ EA + L  + + L  L++ P D + +NA+FR  HTVKG +  L L  + ET H  E+
Sbjct: 12  FVDEARDHLRKVEDGLATLDSTPADSETINAVFRSAHTVKGSSRMLKLIPITETAHKVED 71

Query: 73  VFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELLDELH---RLSKP 129
           V   LR+G    SP L   + + +D ++ Q  AV +  P    DP L   L    R  +P
Sbjct: 72  VLGALRDGSLSWSPELRRLLQRGVDALSAQVDAVADGNPPAEPDPALCAALAAALRGPQP 131

Query: 130 ASEDEDEAAEAHF-----DEPEEEL--------------VEEIIEEVVEDVVEEA----- 165
           A+E     A A         P+ E+              ++E+I  + E V   A     
Sbjct: 132 ATEPPPAPAPASAPPAAEPPPQAEVRLKSADTVRVQLTKLDELIRLMGEVVSSHARLRQR 191

Query: 166 ---VPNVETEVTASASSGVIDKGSIDDINEDEF--EKLLDELHGK 205
              +  +E E      +  +  G   D+ ED F  E L+DELH K
Sbjct: 192 LTDIRQIERETQDRGEAAAL-TGFARDLREDVFSQELLMDELHAK 235