Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 2224 a.a., Chemotaxis protein histidine kinase and related kinases from Kangiella aquimarina DSM 16071

 Score =  237 bits (604), Expect = 6e-66
 Identities = 132/338 (39%), Positives = 202/338 (59%), Gaps = 5/338 (1%)

Query: 444  VTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLELRGEETDLDKNLVEALAD 503
            V  +LQ  +M+TRM P   +  R  R+VR ++  LNK++DL L  E  ++D+ ++E +  
Sbjct: 1747 VNTELQDRLMRTRMVPFNSIESRLRRMVRQISTELNKDVDLILESEG-EMDRTVIERMVA 1805

Query: 504  PLIHLVRNSVDHGIEMPDERAKNGKSRTGKVILSASQEGDHIQLAIVDDGAGMDPDKLRG 563
            PL H++RN++DHGIE  DER K GK+  G V LS S+ G+ + + I DDGAG+  DK+R 
Sbjct: 1806 PLDHMLRNAIDHGIESKDERKKAGKAEKGTVHLSLSRRGNEVYIQIQDDGAGIRKDKVRK 1865

Query: 564  IAVKRGIMDEDAANRLTNKECFNLIFMPGFSSKEKITDISGRGVGMDVVKTAINTLNGSI 623
             A+ +G++DE  +   T++E F LI  PGFS+ E +T ISGRGVGMDVV + I  L GS+
Sbjct: 1866 RAISQGMIDE--SYNPTDRELFRLILQPGFSTAETVTQISGRGVGMDVVHSEILQLGGSL 1923

Query: 624  DIDSTMGKGTKITIKVPLTLAILPTLMVGVAGHPFALPLASVNEIFHLDLRRTNVV--DG 681
            +I S  GKGT +T+++P TL+    LMV V G P+A+PL+++  +  +  +    +  D 
Sbjct: 1924 NISSEEGKGTTMTVRLPFTLSSNQALMVKVKGEPYAIPLSNITTVARVSAKEVLEIYQDK 1983

Query: 682  QLTIIVREKSIPLFYLQNWLAPKKGKVQLRQGHGHVVIVQIGSQRVGLVVDTLIGQEEVV 741
              T     +   L YL   L      V        V+I+Q   + + + VD LIG  E+V
Sbjct: 1984 DKTFTHLGEEYELRYLGQILDRNSDIVPPVDEFVPVLIIQGEDKPIAVHVDELIGSREIV 2043

Query: 742  IKPLDKLLQGTPGMSGATITSDGHIALILDVPDLLKQY 779
            +K + + +   PG+SGA+I  DG + LILD+  L+ ++
Sbjct: 2044 VKNIGRQISTVPGISGASILGDGSVVLILDMQTLVDRF 2081



 Score = 65.1 bits (157), Expect = 4e-14
 Identities = 107/509 (21%), Positives = 194/509 (38%), Gaps = 57/509 (11%)

Query: 1    MSYELDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLAL 60
            +  ++D+++L+ F  EA E+ +  +  L +    P +  ++  + R  HT+KG A     
Sbjct: 1265 LDLDVDDELLEIFSEEAEELFDSDANLLQKWRQEPNNLKIIAELQRNLHTLKGSARMAGF 1324

Query: 61   SELVETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELL 120
            S + +  HG E+++  + +     S   +D   +A D +   F A    E + P+   +L
Sbjct: 1325 SPIGDLAHGLEDLYTAITDQLFASSEEAIDLAERAEDKLLAIFNARNTPEKI-PSPAAML 1383

Query: 121  DELHRLSKPASEDEDEAAEAHFDEPEEELVEEIIEEV---VEDVVEEAVPNVETEVTASA 177
            DE+            +A  A+     E  +    EEV     +  EE  P  ET+  A  
Sbjct: 1384 DEIEGFIA-----AQKAGRAYVRPQSEADIAPAAEEVKPSEPEKAEETTPVAETQQPAEP 1438

Query: 178  SSGVIDKGSIDDINEDEFEKLLDELHGKGKAPGAQSPQAPASAPAKAASVTNSDLNGDIT 237
               +  K  ID       E+L +   G+             ++  +A    ++DL+    
Sbjct: 1439 EE-IESKEEIDTEEAAWNEELAELFLGEA--------SELLTSYEEAIERWSNDLH---N 1486

Query: 238  DDEFEKLLDQLHGKGKGPSIETAAPAAPVTPSTPKATETPKPAAAKSAPGGDDLMTDEEF 297
             +     +  LH    G  +    P   +T       E    A A+    G     D   
Sbjct: 1487 VEPLNTAMRNLHTLKSGAKLAAITPVGELTHKLEGVVE----ALARDPRLGHARWAD-ML 1541

Query: 298  EKLLDELHGSGKGPSVEELEMATRPVASSPVSSDAKASAEASAPSTKPAAKPVAKPAAAK 357
             +  DELH       V   +M  +P        + KA+ E+                   
Sbjct: 1542 RRSYDELH--EMVDQVRNGQMPAKPAELLRKLENDKATIESQLEQ--------------- 1584

Query: 358  PAVAKEEPAKAPAPAAVK-DSDESREVAAAGGAKKAQTESTVRVDTSTLDTIMNMVGELV 416
              + K + A++   A VK  S   R+      AK+A     +RV +  LD ++N+ GE  
Sbjct: 1585 --LDKRDLAESGEQAEVKIVSLADRQKQKEEEAKEAANRDVIRVRSEVLDNLVNLSGEAS 1642

Query: 417  LVRNRLLS--LGLNSNDEEMSKAVANLDVVTADLQGAVMKTRMQPIKKVFGRFPRVVRDL 474
            + R+RL      LN N  EMS  V   D +   L+   ++T  Q +      + R +  +
Sbjct: 1643 IFRSRLEQQVADLNFNLGEMSSTV---DRLREQLRNLEIETEAQVL------YRREISGV 1693

Query: 475  ARSLNKEIDLELRGEETDLDKNLVEALAD 503
                   ++++    + +L ++L+EA +D
Sbjct: 1694 DFDEFDPLEMDRYTRQQELTRSLLEAASD 1722



 Score = 60.1 bits (144), Expect = 1e-12
 Identities = 37/166 (22%), Positives = 82/166 (49%), Gaps = 1/166 (0%)

Query: 5   LDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELV 64
           +D+++ + F+ EA E+LE +   L E + +  +++ ++ I R FHT+KG    +  +++ 
Sbjct: 597 IDDEVREIFIEEADEVLEEMHSLLPEWKQDQTNKEAISTIRRNFHTLKGSGRMVGATDIG 656

Query: 65  ETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELLDELH 124
           E     EN+ + L +     +P+L  T  +  +T+ E  +     E  +    EL D  +
Sbjct: 657 ELSWAIENMLNRLIDHSIEYTPALFVTTEEVANTLPEMVKQFASGEKTK-FPKELADRAN 715

Query: 125 RLSKPASEDEDEAAEAHFDEPEEELVEEIIEEVVEDVVEEAVPNVE 170
           R+SK     + +  +   +E  ++  E+ + ++ +   E  V ++E
Sbjct: 716 RISKGEMITDLQPQQEQTEEESDQAAEQELFDIFKQEAEGHVTSLE 761



 Score = 29.6 bits (65), Expect = 0.002
 Identities = 64/314 (20%), Positives = 114/314 (36%), Gaps = 30/314 (9%)

Query: 44   IFRGFHTVKGGAGFLALSELVETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQF 103
            + R  HT+KG A    +  L       E+ F  L+  +     + M  +    D +    
Sbjct: 780  LLRSLHTLKGVAHIANIQSLTNVIVPVESYFQELKTRELLAEEADMSLIDHTKDLLRHII 839

Query: 104  RAVQEREPLQPADPELLDELHRLSKPASEDEDEAAEAHFDEPEEELVEEIIEEVVEDVVE 163
               ++ + +   + E+L +L +  K   E  +   E   D    EL+++I     + +V+
Sbjct: 840  STPEDDQVISAHEDEILQQLAQQQKRFDESGETGQEQGRD---PELIKDIFNIASDVLVD 896

Query: 164  EAVPNV-ETEVTASASSGVIDKGSIDDINEDEFEKLLDELHGKGKAPGAQSPQAPASAPA 222
                N+ ET              S++ +     E  L+E+         Q   A + A  
Sbjct: 897  IESTNLQETPEPQRLERISYLMASVERLKSILSEAELNEIE--------QVVAALSDALQ 948

Query: 223  KAASVTNSDLN-GDITDDEFEKLLDQLHGKGKGPSIETAAPAAPVTPSTPKATETPKPAA 281
            +  +    D + G +  + + +L +Q        SI       P      +A +T KPA 
Sbjct: 949  RNMTANKVDTSIGTLLQEAYNQLENQFDCLAANLSI-------PEARDLVQALQTWKPAE 1001

Query: 282  A-----KSAPGGDDLMTDEE--FEKLLDELHGSGKGPSVEELEMATRPVASSPVSSDAKA 334
                  +SAP    L   EE  FE+  +E   S + P+ EE E        + +  +   
Sbjct: 1002 TTGLELESAPEEISLGESEEVQFEETPEE---SVQVPTTEEKEEQRATQDDNSIEFNLDD 1058

Query: 335  SAEASAPSTKPAAK 348
                S    KPAA+
Sbjct: 1059 FTPPSKTEEKPAAE 1072