Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1460 a.a., Sensor histidine kinase RcsC from Acinetobacter radioresistens SK82

 Score =  238 bits (607), Expect = 2e-66
 Identities = 211/826 (25%), Positives = 373/826 (45%), Gaps = 61/826 (7%)

Query: 6    DEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELVE 65
            D D+   FL EA E+L  +   L            LN + R  HT+KGGA  +  + +  
Sbjct: 512  DADLRDIFLEEAEELLAGMDSDLNSWTKESGQVTALNNLMRYLHTLKGGANMVQATHMGL 571

Query: 66   TCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADP--ELLDEL 123
              H  E+++  + NGQ  VS  LM  +    D + E+ + ++E++   PA    E+L  +
Sbjct: 572  IAHELESIYQRIINGQVQVSTVLMSIIRLVQDELAERIQILREQQIDYPAPATIEILKNI 631

Query: 124  HRLS----------KPASEDEDEA-------------AEAHFDEPEEEL-VEEIIEEVVE 159
              +S          K A E   E+             A+A   E  EEL  +E +  +VE
Sbjct: 632  ESISTGVLVTTAEPKVAEEKLSESSQNIESDIADCTLADAEIAEHSEELQTDEQVRSIVE 691

Query: 160  DVVEEAVPNVETEVTASASSGVIDKGSIDDINEDEFEKLLDELHG-KGKAPGAQSPQAPA 218
            +V  E     E E     +  ++D+   +  N     +L    H  KG A  A+      
Sbjct: 692  EVFLE-----EAEELLQTAHNLLDQWVEERSNRSLLLQLQRNAHSLKGGARMAELEPVAV 746

Query: 219  SAPAKAASVTNSDLNGDITDDEFEKLLDQ-LHGKGKGPSIETAAPAAPVTPSTPKATETP 277
             A A   +     L+ ++T   ++ LL   L         E       +  S      T 
Sbjct: 747  IAYALENTFEQFGLH-NLTTSVYDPLLHTALRWLENAIFKEQYENFDSLKHSLDSIQFTE 805

Query: 278  KPAAAKSAPGGDDLMTDEEFEKLLDELHGSGKGPS--VEELEMATRPVASSPVSSDAKAS 335
             PA   +    D+++ D     L + +HG G  P   + E +   R   +  +    + S
Sbjct: 806  IPAQLINQIPADNIVADSS---LFEFVHGDGTEPPSMMGEWDNTERTENNEMI----RIS 858

Query: 336  AEASAPSTKPAAKPVAKPAAAKPAVAKEEPAKAPAPAAVK---------DSDESREVAAA 386
            A+        A +     +  +  V +     +    A++         + +   ++ A 
Sbjct: 859  ADLVEKMIDLAGENSINRSRVEMDVGQVGSILSDMELAIQRLADQLRRMEGELESQIIAK 918

Query: 387  GGAKKAQTESTVRVDTSTLDTIMNMVGELVLVRNRLLSLG--LNSNDEEMSKAVANLDVV 444
             G + ++      ++     ++  +   L    + LL     L+    +    +     +
Sbjct: 919  HGTENSRYSDFDPLEMDQYSSLNQLSKSLAESASDLLDFKTTLSEKIRDTEGLLLQQSRI 978

Query: 445  TADLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLELRGEETDLDKNLVEALADP 504
             A++Q  +M+TR+ P  ++  R  R+ R  + +LN+  +L ++  E +LD+N++E L  P
Sbjct: 979  QAEIQENLMRTRLVPFSRLLPRLQRIARQTSSALNRPAELVVQNTEGELDRNILERLVTP 1038

Query: 505  LIHLVRNSVDHGIEMPDERAKNGKSRTGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGI 564
            L H++RN++DHGIE  ++R K GK  +G++ L+ +++G  + +   DDG G++ +KL+  
Sbjct: 1039 LEHMLRNAIDHGIETIEQRLKQGKPESGRIELNINRQGTDVIITFTDDGQGINLEKLKNK 1098

Query: 565  AVKRGIMDEDAANRLTNKECFNLIFMPGFSSKEKITDISGRGVGMDVVKTAINTLNGSID 624
            A++RG++   A  +L  +E   LIF PG S+  +IT ISGRGVG+DVV+++I  + G + 
Sbjct: 1099 ALERGLI--GAEQKLEAEELAQLIFHPGLSTAVEITQISGRGVGLDVVQSSIKAMGGHVT 1156

Query: 625  IDSTMGKGTKITIKVPLTLAILPTLMVGVAGHPFALPLASVNEIFHL--DLRRTNVVDGQ 682
            ++S  G+GT  TI+VP T+AI   LMV      +A+PLA +  I  +   +        +
Sbjct: 1157 VESVQGQGTTFTIRVPTTVAISDALMVKAGDQQYAVPLAQIERIVRISPSMLEDYFAGKE 1216

Query: 683  LTIIVREKSIPLFYLQNWLAPKKGKVQLRQGHGHVVIVQIGS--QRVGLVVDTLIG-QEE 739
             T  +      L YL  ++A +         H   V++  GS  Q V L+VD L+G + +
Sbjct: 1217 DTFRIDNMYYKLRYLSEFVANQSLPRLTGIVHSLPVLLIKGSSGQTVALLVDQLVGSRAQ 1276

Query: 740  VVIKPLDKLLQGTPGMSGATITSDGHIALILDVPDLLKQYAAASRV 785
            +V+KP+ + L     ++GATI  DG + LILD   + +Q  ++ RV
Sbjct: 1277 IVVKPVGQQLASVGAVAGATILGDGQVCLILDGQYIARQVQSSLRV 1322



 Score = 35.4 bits (80), Expect = 2e-05
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 5   LDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELV 64
           L  + L  FL E+ E L  + E L    NN E     NA+ R  HT++G +    +  + 
Sbjct: 200 LTAETLAIFLEESEEHLATIDEFL----NNNEQGSNYNALIRALHTLRGSSAMAQVEHIF 255

Query: 65  ETCHGAENVF 74
           E     EN+F
Sbjct: 256 EASSKVENLF 265



 Score = 35.0 bits (79), Expect = 3e-05
 Identities = 21/70 (30%), Positives = 33/70 (47%)

Query: 6  DEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELVE 65
          D +IL+ F+ E  EI   L   + +    PE +D L +I R FHT+KG    +      E
Sbjct: 23 DAEILEIFVEELEEIFTDLDVLIQQWIQQPEQQDKLTSIRRYFHTLKGSGRMVGAKSSGE 82

Query: 66 TCHGAENVFD 75
               E++ +
Sbjct: 83 LAWTVEDLLN 92