Pairwise Alignments

Query, 651 a.a., c-type cytochrome biogenesis protein CcmF from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE (NCBI) from Escherichia coli BW25113

 Score =  350 bits (897), Expect = e-100
 Identities = 187/396 (47%), Positives = 243/396 (61%), Gaps = 14/396 (3%)

Query: 47  FFLLSISFAVLLWAFYINDFTVQYVASNSNSELPWYYRLTAVWGAHEGSLLLWVLIQAAW 106
           F LL ++F VL + F I+DF+V YVA +S S L W  +L AVWG HEGSLLLWVL+ +AW
Sbjct: 30  FALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLWVLLLSAW 89

Query: 107 TVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNPFLRTLPYFPIDGRDLNPLLQ 166
           +   A   R          LAV+ ++    LLF++L S+PF+R  P   I+GRDLNP+LQ
Sbjct: 90  SALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPP-AIEGRDLNPMLQ 148

Query: 167 DPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWLFLTLGIVLG 226
            PGLI HPP+LY+GY G  VA S A+ASL+ G  D A AR    W    W  LT GI+LG
Sbjct: 149 HPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDGACARICWRWALPGWSALTAGIILG 208

Query: 227 SWWAYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSL 286
           SWWAY ELGWGGWWFWDPVENAS +PWL+ TAL+HSL++T +RG F  W++LLAI    L
Sbjct: 209 SWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFCHWSLLLAIVTLML 268

Query: 287 SLLGTFLVRSGILVSVHAFASDPARGMFILGFLIAVIGGSLLLFAIKGASVRVRGNFELV 346
           SLLGT +VRSGILVSVHAFA D  R + +      +   SL L+  +        +F  +
Sbjct: 269 SLLGTLIVRSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGWRARDGGPAVHFSGL 328

Query: 347 SRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSIGAPFFNMLFAWLMIPFAFFM 406
           SRE  +L   +L    L +VL+GTL P+++  LG G +S+GAP+FN       +PF   M
Sbjct: 329 SREMLILATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPYFNR----ATLPFGLLM 384

Query: 407 ----GIGPLIRWKRDQISTLFKPMLITAMASLVLAA 438
                +   +  KR Q+     P L+     L+ AA
Sbjct: 385 LVVIVLATFVSGKRVQL-----PALVAHAGVLLFAA 415



 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 90/307 (29%), Positives = 129/307 (42%), Gaps = 43/307 (14%)

Query: 351 SLLVNNVLLMTALAVVLI--GTLLPLVHKQLGLGSVSIGAPFFNMLFAWLMIPFAFFMGI 408
           SLL+  V LM +L   LI    +L  VH    L +V    P F+ LFA + +      G 
Sbjct: 258 SLLLAIVTLMLSLLGTLIVRSGILVSVHA-FALDNVR-AVPLFS-LFALISLASLALYGW 314

Query: 409 -----GPLIRWKRDQISTLFKPMLITAMASLVLAALMMWLNAPTFSPMAY--LGW----- 456
                GP + +     S L + MLI A   L  A L++ L   T  PM Y  LGW     
Sbjct: 315 RARDGGPAVHF-----SGLSREMLILATLLLFCAVLLIVL-VGTLYPMIYGLLGWGRLSV 368

Query: 457 --------VMAWWILLLHAYELHTRATHRHRFIVGVKKLQRSHWAMMLGHVGLAVSIIGI 508
                    + + +L+L    L T       F+ G    +R     ++ H G+ +   G+
Sbjct: 369 GAPYFNRATLPFGLLMLVVIVLAT-------FVSG----KRVQLPALVAHAGVLLFAAGV 417

Query: 509 AMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQGQYVNTLH 568
            +      E  + L PG    L  Y F F+ +  +   NY    A   +    Q +  L 
Sbjct: 418 VVSSVSRQEISLNLQPGQQVTLAGYTFRFECLDLQAKGNYTSEKAIVALFDHQQRIGELT 477

Query: 569 AEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWIWAGGLLM 628
            E+RFY   +  M E +I      D Y  MGE+   +R +A R+Y +  VRWIW GGLLM
Sbjct: 478 PERRFYEARRQQMMEPSIRWNGIHDWYAVMGEKTGPDR-YAFRLYVQSGVRWIWGGGLLM 536

Query: 629 AIGGALA 635
             G  L+
Sbjct: 537 IAGALLS 543