Pairwise Alignments

Query, 254 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 233 a.a., VacJ family lipoprotein from Pseudomonas simiae WCS417

 Score =  109 bits (272), Expect = 6e-29
 Identities = 65/194 (33%), Positives = 113/194 (58%), Gaps = 6/194 (3%)

Query: 39  DPLESFNRQMWTINYDYLDPYVVRPVSLFYVGYVPKPVRSGIANFLSNLDEPASMVNNLL 98
           DP E  NR ++  N D LD Y ++P++  Y    P  V+ GI N  +NL E  ++ N++L
Sbjct: 34  DPWEGVNRPIFAFN-DVLDTYALKPLAQGYQLITPGVVQDGIHNVFNNLGEVKNLANDVL 92

Query: 99  MGNGTKAVDHFNRFWINTSFGLLGLIDIASEAGIKKYDDKAFSDAVGHYGVGNGPYLMVP 158
                 A    +RF +N++ GL+GLID+A+  G+++  D+ F   +G++GV +GPYL++P
Sbjct: 93  QVKFHSAGVDTSRFLLNSTIGLVGLIDVATPMGLQR-SDEDFGQTLGYWGVNSGPYLVLP 151

Query: 159 GYGPYTVREVTDVVDGMYF-PLAYL-NIWAGVGKWALEGMETRAALVSQEALLQDSPDPY 216
             GP T+R+   ++   Y  P+ Y+ ++      +++  ++ RA  ++ E L+  + D Y
Sbjct: 152 FLGPSTLRDAPAILPDAYANPVRYMGDVPTRNSLYSVGVIDGRAQYLASEKLM--TGDKY 209

Query: 217 SLARDAYLQRQAFK 230
           +  R AYLQ +AFK
Sbjct: 210 TFIRSAYLQNRAFK 223