Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 907 a.a., DNA topoisomerase 1 from Xanthobacter sp. DMC5

 Score =  106 bits (264), Expect = 5e-27
 Identities = 148/576 (25%), Positives = 242/576 (42%), Gaps = 69/576 (11%)

Query: 74  WQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKS-KKETVQR 132
           W + P+  + ++L  +   +K A  +I A DPDREG+ +   V++  +  K+ K + V+R
Sbjct: 64  WDVDPK--AQKRLNEIAAAVKGADGLILATDPDREGEAISWHVLEVLRQKKALKSQKVER 121

Query: 133 LLISDLNLSAVKRALQGLRSNREFIPLSVSA-LARSRADWLYGMNMSRAYTLLGKKAGYQ 191
           ++ + +   AV   L+ ++S R      V A LAR   D+L G  +S    +L +K    
Sbjct: 122 VVFNAITKQAV---LEAMKSPRAIDSALVDAYLARRALDYLVGFTLS---PVLWRKL--P 173

Query: 192 GVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIR---ARWKPSE 248
           G  S GRVQ+  L LV  R+ EIE F+  +Y+++ A +      E F+ R   A  K   
Sbjct: 174 GARSAGRVQSVALRLVCDREREIETFVRKEYWSILAKLATPRNEE-FEARLSGADGKKIT 232

Query: 249 ACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKR 308
                  EE R   R+ +D+ A R       V   E    K+    P++ S LQ +A+++
Sbjct: 233 RLSVGTAEEARAF-REALDSAAFR-------VRSVEAKPMKRHPQPPFTTSTLQQEASRK 284

Query: 309 YNFSAQQVLDLCQSLY-------EKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQE 361
              +  + + + Q LY       E   LITY R+D   +  E +A   D +       Q+
Sbjct: 285 LGLAPARTMQIAQRLYEGVDVGGETVGLITYMRTDGVDMAPEAVAATRDAIG--KQFGQK 342

Query: 362 MVTAVNDADLSLRSKAWNDSKVDAHHAIIPTP----KKASVNALSGHEMKVYQLI-ARQY 416
            +  V        +KA N    +AH AI PT      +     L G + K+Y+LI  R  
Sbjct: 343 YLPGV---PRKYTTKAKNAQ--EAHEAIRPTDPSRHPRDVARYLDGEQAKLYELIWIRTV 397

Query: 417 LMQFYPAAIYAEAKLVFNIAGGIFI---AKGRQLLSAGWKVL--TGQQDE-QEECVDKVP 470
             Q   A +      +   AG   +   A G  +   G+  L   G+ DE  +E   ++P
Sbjct: 398 ASQMESAELERTTADIEAKAGARTLDLTATGTVVKFDGFLTLYREGKDDEDDDEEGRRLP 457

Query: 471 PLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTE 530
            +     L  R+    Q  TEPP  ++EA+L++ M                 E  G+G  
Sbjct: 458 AMSANEALAKRDISTTQHFTEPPPRYSEASLVKRM-----------------EELGIGRP 500

Query: 531 ATRAGILDTLFKRGLLQRDNKLIKSTPAGR---GLIHALPSEATYPDMTAHWEHQLQAIA 587
           +T A +L  L  R  ++ D K +     GR     + +        D TA  E +L  ++
Sbjct: 501 STYAAVLAVLRDREYVKLDKKKLVPEDKGRLVTAFLESFFKRYVEYDFTADLEEKLDEVS 560

Query: 588 EKGQAYQPFMQTLQGRLEQLIEQVQVAPVPVSLQAL 623
                ++  ++         IE  +   V   L AL
Sbjct: 561 AAELDWKEVLRAFWQDFHAAIEATKDLRVSQVLDAL 596