Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

 Score =  445 bits (1144), Expect = e-129
 Identities = 253/653 (38%), Positives = 376/653 (57%), Gaps = 23/653 (3%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           RL++ EKPS A+ IA  L    + + GC    NG  VTWCIGHLLE   PDAYDE+YK+W
Sbjct: 2   RLYLCEKPSQAKDIAAVLGASRRGD-GCW-LGNGVTVTWCIGHLLETAPPDAYDEKYKRW 59

Query: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKV 122
            +ADLPI+PE+W++R +  ++ Q   V++LL EA +++ A D DREG+++  E++++C+ 
Sbjct: 60  VLADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRY 119

Query: 123 PKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYT 182
               +  +QRL +S L+ +++++AL  L+   E   L  SAL RSRADWL GMNMSR +T
Sbjct: 120 ----RGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFT 175

Query: 183 LLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRA 242
           LLG+++GYQGVL VGRVQTP L LVV RD  I  F+P  Y+ +D  + ++  T      A
Sbjct: 176 LLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERIT----FTA 231

Query: 243 RWKPSE-ACLPWQDEEGRVTNRKLVDNVASRIANQP-ATVTESEQDQTKQAAPLPYSLSA 300
           +W+ +E AC    D++GR  + +L  + A  + N   A + +   ++ ++ APLP+ L  
Sbjct: 232 QWRAAEDAC----DDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGT 287

Query: 301 LQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360
           LQ   +K+    AQ+ LD+ QSLYE HK+ITYPRSDC YLP    ++AP ++AA+A    
Sbjct: 288 LQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADA 347

Query: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQF 420
            +   +   +   RS+AWND+KV AHH IIPT     V  L+G    VY LI  +YL QF
Sbjct: 348 AVNELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQLTGKHRAVYTLIRARYLAQF 407

Query: 421 YPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWK-----VLTGQQDEQEECVDKVPPLPVG 475
            P   Y   +  F+ AG    A G+ ++  GWK      L   +  +      +P L  G
Sbjct: 408 LPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPALVQG 467

Query: 476 IVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAG 535
                 +  +K   T+PP+ FTE  L++AM  +A+ V D  LK+ L++T G+GTEATRAG
Sbjct: 468 QDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAG 527

Query: 536 ILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQP 595
           I+  L  RG L ++ K + +TPA   LI A+P     P  TA WE  L  +     + + 
Sbjct: 528 IIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEE 587

Query: 596 FMQTLQGRLEQLIEQVQVAPVPVSLQALPA--VSKPAFKRTRRAPKSKARTYK 646
           F+      + + + +     + ++  A PA   + P  K+ + AP+  A + K
Sbjct: 588 FVAKQAAWMSKQVARCNGMRMTITGPASPAGRGATPWKKKRKSAPRKTAASPK 640