Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 873 a.a., DNA topoisomerase I from Pseudomonas simiae WCS417

 Score = 97.8 bits (242), Expect = 2e-24
 Identities = 131/527 (24%), Positives = 216/527 (40%), Gaps = 52/527 (9%)

Query: 89  VRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQ 148
           +R+L K+A  I  A D DREG+ +   + +      S+    +R++ +++   A++ A  
Sbjct: 103 LRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDSR---YKRVVFNEITKKAIQEAFS 159

Query: 149 GLRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVV 208
             +     I    +  AR   D + G  +S    LL  K      LS GRVQ+  + LVV
Sbjct: 160 --KPGELDIDRVNAQQARRFLDRVVGYMVS---PLLWAKIARG--LSAGRVQSVAVKLVV 212

Query: 209 RRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDN 268
            R+ EI  FIP +Y+ + A +    G       AR K  EA  P  + +      KL  +
Sbjct: 213 EREREIRAFIPEEYWEVHADLGTAKGANVRFEVAREK-GEAFKPLNEAQAMAALEKLKSS 271

Query: 269 VASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHK 328
             S        + + E   T      P+  S LQ  A+ R  F  ++ + + Q LYE   
Sbjct: 272 SYS--------IVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-G 322

Query: 329 LITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHA 388
            ITY R+D   L  + +A A   +       +E          ++ S    +   +AH A
Sbjct: 323 YITYMRTDSTNLSVDAVAMARTYI------EEEFGKKYLPEKPNVYSS--KEGAQEAHEA 374

Query: 389 IIPTPKKASVNALSGHEM---KVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGR 445
           I P+    +   LSG E    ++Y+LI RQ+L      A Y    +    +     AKGR
Sbjct: 375 IRPSDANTTPAKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTVTVAASDFELRAKGR 434

Query: 446 QLLSAGWKVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAM 505
            L   G+  +  Q  +  +  D +P +  G  L+    +  Q  T+PP  ++EA+L++ M
Sbjct: 435 ILKFDGYTRVMPQIAKPGD-DDVLPDMAQGDTLKLITLDPSQHFTKPPARYSEASLVKEM 493

Query: 506 TGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHA 565
                            E  G+G  +T A I+ T+  RG +   N+   S   G  +   
Sbjct: 494 -----------------EKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTER 536

Query: 566 LP---SEATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIE 609
           L    S       TA  E  L  +A+  + ++  +    G  ++ +E
Sbjct: 537 LSESFSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLE 583