Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 860 a.a., DNA topoisomerase I (EC 5.99.1.2) from Sphingobium sp. HT1-2

 Score =  120 bits (302), Expect = 2e-31
 Identities = 138/538 (25%), Positives = 236/538 (43%), Gaps = 51/538 (9%)

Query: 84  QQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAV 143
           +QL  +    K+AT++I A DPDREG+ +   V +  +  K+  +TV R+  + +  +AV
Sbjct: 60  KQLKAIADEAKKATRLILATDPDREGEAISWHVQEVLRAKKALPQTVDRVTFNAITKAAV 119

Query: 144 KRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPV 203
             A+   R+  E   L  +  AR   D+L G  +S    +L +K    G  S GRVQ+  
Sbjct: 120 LDAMAKPRALDE--DLIDAYRARRALDYLVGFTLS---PVLWRKL--PGAKSAGRVQSVA 172

Query: 204 LGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNR 263
           L LVV R+ EIE F+P +Y+++ A +  Q G  +     RWK  +       +EG     
Sbjct: 173 LRLVVEREREIESFVPQEYWSISAEME-QGGQGFTARLVRWKGEKIDRLTIGKEGDAMAA 231

Query: 264 KLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSL 323
           K  D  A R      TV + E     +  P P++ S LQ +AA++  FSA   + + Q L
Sbjct: 232 K-ADVEAGRF-----TVDKVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQL 285

Query: 324 YEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKV 383
           YE    ITY R+D   +    ++ A   +A   +        + +     ++KA N    
Sbjct: 286 YE-DGAITYMRTDGVQMDGSAISAARKAIAERYDGGY-----LPEKPRQYQTKAKNAQ-- 337

Query: 384 DAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYPAAIYAEA--KLVFNIAGGIFI 441
           +AH AI PT          G   ++Y LI ++ L     +A        +V         
Sbjct: 338 EAHEAIRPTEFHRD-KVGGGDHARLYDLIFKRALASQMASARLERTTIDMVDGSGSHTLR 396

Query: 442 AKGRQLLSAGWKVL--TGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEA 499
           A G+ ++  G+  L   G+ D +++    +P L  G     ++   +Q  T+PP  ++EA
Sbjct: 397 ATGQVVIFPGFLALYEEGRDDAEDDDSKLLPRLSEGDAPAKKKVSAEQHFTQPPPRYSEA 456

Query: 500 TLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAG 559
           +L+            K+L+++     G+G  +T A  L  L  R  ++ +     +  +G
Sbjct: 457 SLV------------KKLEEL-----GIGRPSTYASTLQVLKDRDYVRVEKNRFFAEESG 499

Query: 560 R---GLIHALPSEATYPDMTAHWEHQLQAI----AEKGQAYQPFMQTLQGRLEQLIEQ 610
           R     +          D TA  E +L  I    A+  +  + F +  + +  +++EQ
Sbjct: 500 RLVTAFLERFFERYVSYDFTAGLEDELDEISGGRAQWQEVLEAFWKDFKPKTAEIMEQ 557