Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 880 a.a., DNA topoisomerase III from Ralstonia solanacearum UW163

 Score =  310 bits (793), Expect = 2e-88
 Identities = 200/622 (32%), Positives = 332/622 (53%), Gaps = 27/622 (4%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWN 63
           L IAEKPS+A  IA AL    K ++     ++  +++  +GHL+E   PD Y+ +  KW+
Sbjct: 5   LIIAEKPSVAADIARALGGFTKHDE--YYESDDHVLSSAVGHLVEIAAPDEYEVKRGKWS 62

Query: 64  MADLPIIPEQWQLRPRKSSSQQLTVVRKLLK--EATQIIHAGDPDREGQLLVDEVIDYCK 121
            A LP+IP  + LRP   S  +L V+ +L+K  + T +I+A D  REG+L+   +  +  
Sbjct: 63  FAHLPVIPPHFDLRPIAKSESRLKVLTRLIKRKDVTSLINACDAGREGELIFRLIAQHAN 122

Query: 122 VPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAY 181
                K  ++RL +  +   A++     LRS+ + +PL+ +A  RS ADWL G+N +RA 
Sbjct: 123 T----KLPIRRLWLQSMTPQAIRDGFAQLRSDDDMLPLADAARCRSEADWLVGINGTRAM 178

Query: 182 TLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGT---EYF 238
           T    K G   + +VGRVQTP L +VV R+E+I+ F+P DY+ + A      G     +F
Sbjct: 179 TAFNSKGGGFFLTTVGRVQTPTLSIVVEREEKIKRFVPRDYWEVRAEFIAAAGLYEGRWF 238

Query: 239 DIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSL 298
           D + +    +A    +  E R+ +     ++ +   ++P TVTE  +  T Q +P  + L
Sbjct: 239 DPKFKKNEFDA----EQRESRLWSEAEAKSIVAACRDKPGTVTEESKPST-QMSPALFDL 293

Query: 299 SALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANN 358
           ++LQ +A  R+ FSA+  L L Q+LYEKHK++TYPR+D R LP++++      +  +A++
Sbjct: 294 TSLQREANGRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRALPEDYMGTVKQTLDMLADS 353

Query: 359 AQEMV----TAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIAR 414
           +   +      +N   +    + +++SK+  H AIIPT +  +   LS  E K+Y L+ R
Sbjct: 354 SPNYLPHAKKILNSQWVKPNKRIFDNSKISDHFAIIPTLQ--APKNLSEPEQKLYDLVVR 411

Query: 415 QYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPV 474
           ++L  F+PAA Y     V  +AG  F  +G+ L++ GW  + G+Q E +     + P+  
Sbjct: 412 RFLAVFFPAAEYLVTTRVTEVAGHHFKTEGKVLVNPGWLAVYGRQAEGQGEDANLVPVAK 471

Query: 475 GIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRA 534
              ++  + E     T+PP  + EATLL AM G  + V D  L++ +    GLGT ATRA
Sbjct: 472 DEKVKTDKVEPVSLTTKPPARYNEATLLSAMEGAGKLVDDDALREAM-AGKGLGTPATRA 530

Query: 535 GILDTLFKRGLLQRDNKLIKSTPAGRGLIHAL----PSEATYPDMTAHWEHQLQAIAEKG 590
            I++ L     L R+ + +  T     L+  L      E T  ++T  WEH+L  I    
Sbjct: 531 AIIEGLLTEKYLLREGRELIPTAKAFQLMTLLRGLGVEELTQAELTGEWEHKLAQIERGR 590

Query: 591 QAYQPFMQTLQGRLEQLIEQVQ 612
            A   FM+ +    +Q++++ +
Sbjct: 591 LARDEFMREIAQMTQQIVKRAK 612