Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

 Score =  447 bits (1151), Expect = e-130
 Identities = 260/653 (39%), Positives = 379/653 (58%), Gaps = 24/653 (3%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDI-VTWCIGHLLEQVEPDAYDERYKK 61
           RLF+ EKPS A+ IA  L   ++K  GC +    DI VTWCIGHLLE   PD+YDERYK+
Sbjct: 2   RLFLCEKPSQAKDIAKVLGA-NRKGDGCWQ--GTDICVTWCIGHLLETAPPDSYDERYKR 58

Query: 62  WNMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCK 121
           WN+ADLPIIP++W++  +  ++ Q   V++LL EA +++ A D DREG+++  E++++C+
Sbjct: 59  WNLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR 118

Query: 122 VPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAY 181
                +  VQRL +S L+ +++++AL  L    E   L  SAL RSRADWL GMNMSR +
Sbjct: 119 Y----RGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLF 174

Query: 182 TLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIR 241
           TLLG+++GYQGVL VGRVQTP L LVV RD  I +F+P  ++ +D  +  ++  + F+  
Sbjct: 175 TLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAID--VQLEHAGQRFN-- 230

Query: 242 ARWK-PSEACLPWQDEEGRVTNRKLVDNVASRIANQ-PATVTESEQDQTKQAAPLPYSLS 299
           A+W+ P +AC    D++GR   + L    A+ I +   A   +   ++ ++AAPLP+ L 
Sbjct: 231 AQWRAPEDAC----DDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLG 286

Query: 300 ALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNA 359
            LQ   +K++   AQ+ LD+ Q+LYE HKLITYPRSDC YLP+   A+AP ++AA+    
Sbjct: 287 TLQELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRAD 346

Query: 360 QEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQ 419
             +       +   RS+AWND+KV AHH IIPT   +  + L      VY LI  +YL Q
Sbjct: 347 ASLAPLQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQ 406

Query: 420 FYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWK-----VLTGQQDEQEECVDKVPPLPV 474
           F P   Y   +  F+ AG    A G+Q++  GW+      LT  +  +      +P L  
Sbjct: 407 FLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALRE 466

Query: 475 GIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRA 534
           G        ++K   T+PP+ FTE  L++AM  +A+ V D  LK+ L+ET G+GTEATRA
Sbjct: 467 GQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRA 526

Query: 535 GILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQ 594
            I+  L  RG L ++ K + +TPA   LI A+P     P  TA WE  L  +       +
Sbjct: 527 SIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLE 586

Query: 595 PFMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKRTRRAPKSKARTYKA 647
            F+      + +L+E+     + +S  A  A + P  K+ R   KSKA   KA
Sbjct: 587 EFVARQSAWMGKLVERCSGMRMTISGPAAGA-APPWKKKRRGGGKSKATGSKA 638